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Genomic data visualization on the Web.

Wei Wu1, William S Noble

  • 1Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, Seattle, WA 98195, USA. weiw@u.washington.edu

Bioinformatics (Oxford, England)
|February 28, 2004
PubMed
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Prism is a web-based tool that generates annotated heat maps for visualizing genomic data. This software allows users to quickly explore genome-wide data with interactive, clickable heat maps linked to genomic databases.

Area of Science:

  • Genomics
  • Bioinformatics
  • Data Visualization

Background:

  • Genomic data is often represented in matrix format.
  • Heat maps are a common visualization technique for matrix data.
  • Existing tools may lack efficient annotation and interactivity.

Purpose of the Study:

  • To introduce Prism, a web-based software tool.
  • To enable rapid generation of annotated heat map visualizations for genome-wide data.
  • To enhance the exploration of genomic datasets.

Main Methods:

  • Developed a web-based software tool named Prism.
  • Integrated genome-specific annotation catalogs.
  • Included a catalog upload feature for user-defined annotations.
  • Implemented clickable heat maps for drill-down analysis.

Related Experiment Videos

  • Linked gene annotations to external genomic databases.

    • Main Results:

    • Prism facilitates quick generation of annotated heat maps.
    • The tool supports genome-specific and user-uploaded annotations.
    • Interactive heat maps allow detailed examination of data entries.
    • Annotations are linked to relevant genomic databases for further information.

    Conclusions:

    • Prism provides an efficient platform for visualizing and exploring genome-wide data.
    • The interactive and annotated heat maps improve data interpretation.
    • The software enhances accessibility to genomic information through database links.