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The molecular defect leading to Fabry disease: structure of human alpha-galactosidase
Scott C Garman1, David N Garboczi
1Structural Biology Section, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Twinbrook II, 12441 Parklawn Drive, Rockville, MD 20852, USA. sgarman@niaid.nih.gov
Insights
Researchers determined the 3D structure of human alpha-galactosidase (alpha-GAL), revealing its catalytic mechanism and mutation sites. This structural insight into alpha-GAL advances understanding of Fabry disease.
Area of Science:
- Biochemistry
- Structural Biology
- Genetics
Background:
- Fabry disease is an X-linked lysosomal storage disorder caused by alpha-galactosidase (alpha-GAL) deficiency.
- This deficiency leads to substrate accumulation, causing symptoms like chronic pain and organ damage.
Purpose of the Study:
- To elucidate the three-dimensional structure of human alpha-GAL.
- To understand the enzyme's catalytic mechanism and substrate binding.
- To map Fabry disease-associated mutations onto the protein structure.
Main Methods:
- X-ray crystallography was used to determine the structure of the human alpha-GAL glycoprotein.
- The structure of the alpha-GAL-product complex was determined to reveal the catalytic mechanism.
- Missense and nonsense mutations were cataloged and mapped onto the 3D structure.
Main Results:
- The human alpha-GAL structure was determined as a homodimer with distinct functional domains.
- N-linked glycosylation sites were identified, explaining lysosomal transport via the mannose-6-phosphate receptor.
- The catalytic mechanism was elucidated, highlighting the roles of aspartic acid residues D170 and D231.
- 245 disease-associated mutations were mapped onto the structure.
Conclusions:
- The determined structure provides a molecular basis for understanding Fabry disease.
- Structural insights can guide the development of targeted therapies for Fabry disease.
- This work positions Fabry disease as a molecular disease with a defined structural basis.
Abstract:
Fabry disease is an X-linked lysosomal storage disease afflicting 1 in 40,000 males with chronic pain, vascular degeneration, cardiac impairment, and other symptoms. Deficiency in the lysosomal enzyme alpha-galactosidase (alpha-GAL) causes an accumulation of its substrate, which ultimately leads to Fabry disease symptoms. Here, we present the structure of the human alpha-GAL glycoprotein determined by X-ray crystallography. The structure is a homodimer with each monomer containing a (beta/alpha)8 domain with the active site and an antiparallel beta domain. N-linked carbohydrate appears at six sites in the glycoprotein dimer, revealing the basis for lysosomal transport via the mannose-6-phosphate receptor. To understand how the enzyme cleaves galactose from glycoproteins and glycolipids, we also determined the structure of the complex of alpha-GAL with its catalytic product. The catalytic mechanism of the enzyme is revealed by the location of two aspartic acid residues (D170 and D231), which act as a nucleophile and an acid/base, respectively. As a point mutation in alpha-GAL can lead to Fabry disease, we have catalogued and plotted the locations of 245 missense and nonsense mutations in the three-dimensional structure. The structure of human alpha-GAL brings Fabry disease into the realm of molecular diseases, where insights into the structural basis of the disease phenotypes might help guide the clinical treatment of patients.
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