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Gene expression profiling of p53-sensitive and -resistant tumor cells using DNA microarray
1Texas A&M University System Health Science Center, Department of Pathology and Laboratory Medicine, College Station, TX 77843-1114, USA. s-maxwell@tamu.edu
Abstract:
Overexpression of wild-type p53 in ECV-304 tumor cells induced extensive apoptosis and the eventual death of nearly all of the cells. We generated ECV-304 cells resistant to p53-induced apoptosis as a strategy to identify novel genes that might be relevant to p53-mediated apoptosis. ECV-304 cells resistant to p53 were isolated by repeated infections with a recombinant p53 adenovirus and were designated as DECV. The expression of 5,730 genes in p53-resistant (DECV) and p53-sensitive ECV-304 cells were profiled by DNA microarray analysis. We report here the expression of 80 genes that differed by 2-fold or more between sensitive and resistant cells upregulated for p53. Many of these differentially expressed genes are regulated by p53 in ECV-304 and H1299 p53-null cells. Our analysis identifies many new potential targets for p53 that play roles in cell cycle regulation, DNA repair, redox control, cell adhesion, apoptosis, and differentiation.
Insights
Wild-type p53 overexpression triggers apoptosis in tumor cells. Researchers identified 80 novel genes involved in p53-mediated apoptosis by analyzing p53-resistant cells, offering new therapeutic targets.
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- Wild-type p53 is a tumor suppressor that induces apoptosis.
- Understanding p53-mediated apoptosis is crucial for cancer therapy.
- Identifying genes involved in apoptosis resistance can reveal new therapeutic targets.
Purpose of the Study:
- To identify novel genes involved in p53-mediated apoptosis.
- To generate a model of p53-induced apoptosis resistance.
- To profile gene expression differences between sensitive and resistant cells.
Main Methods:
- Overexpression of wild-type p53 in ECV-304 tumor cells.
- Generation of p53-resistant ECV-304 cells (DECV) via adenovirus infection.
- DNA microarray analysis of gene expression in sensitive and resistant cells.
Main Results:
- Identified 80 differentially expressed genes (≥2-fold change) between p53-sensitive and p53-resistant cells.
- Many identified genes are regulated by p53 in both ECV-304 and H1299 p53-null cells.
- Genes involved in cell cycle regulation, DNA repair, redox control, cell adhesion, apoptosis, and differentiation were identified.
Conclusions:
- p53-resistant cells provide a valuable tool for discovering genes in p53-mediated apoptosis.
- The study identified numerous potential p53 target genes with roles in critical cellular processes.
- These findings may lead to new therapeutic strategies targeting p53 pathways in cancer.
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