Comparisons of envelope through 5B sequences of infectious bronchitis coronaviruses indicates recombination occurs in
Judy Elaine Brooks1, Aaron Cameron Rainer, Rebecca Lynn Parr
1Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA.
Abstract:
A 1.78 kb sequence, including the E, M, 5a and 5b genes, and the intergenic region between the M and 5a genes, of six US strains of infectious bronchitis (corona)virus (IBV) were sequenced and compared to the published sequences for two additional strains. The overall identities as determined through pairwise analyses of nucleotide sequences of the entire 1.78kb region ranged from 90 to 99%, with the 5b open reading frame (ORF) having the greatest identity (94-99%) while the identities of the E, 5a and M ORFs ranged from 87 to 100%. Nucleotide sequencing of recent field isolates from Alabama (Ala1) and California (Cal3) revealed distinct shifts in homology in the M gene, indicating two apparent recombination events between the Holland 52/Mass41-like strain and an Ark-like strain, both origins of commonly used vaccine strains. Putative sites of recombination could also be identified in both the E and M ORFs of laboratory strains of IBV.
Insights
This study sequenced infectious bronchitis virus (IBV) strains, revealing high genetic identity but also recombination events. These findings are crucial for understanding IBV evolution and vaccine development.
Area of Science:
- Virology
- Molecular Biology
- Genetics
Background:
- Infectious bronchitis virus (IBV) is a significant pathogen in poultry.
- Understanding IBV genetic diversity and evolution is key for disease control.
Purpose of the Study:
- To analyze the genetic sequences of US IBV strains.
- To identify genetic variation and recombination events within IBV.
Main Methods:
- Sequencing of a 1.78 kb region including E, M, 5a, and 5b genes of six US IBV strains.
- Comparison of obtained sequences with two additional published IBV strains.
- Nucleotide sequence analysis to determine genetic identities and detect recombination.
Main Results:
- Overall nucleotide sequence identities ranged from 90-99% across the analyzed region.
- The 5b open reading frame (ORF) showed the highest identity (94-99%).
- Recombination events were detected in the M gene of recent field isolates and potentially in E and M ORFs of laboratory strains.
Conclusions:
- US IBV strains exhibit high genetic similarity but also evidence of recombination.
- Recombination events involving vaccine-like strains suggest complex IBV evolution.
- Findings highlight the need for ongoing genetic surveillance of IBV.
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