Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

VisANT: an online visualization and analysis tool for biological interaction data.

Zhenjun Hu1, Joseph Mellor, Jie Wu

  • 1Bioinformatics Program, Boston University, Boston, MA 02215, USA. zjhu@bu.edu

BMC Bioinformatics
|March 19, 2004
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

An Agrigenomics Trifecta: Greenhouse Gas Drawdown, Food Security, and New Drugs.

Cold Spring Harbor perspectives in biology·2023
Same author

The Role of Synthetic Biology in Atmospheric Greenhouse Gas Reduction: Prospects and Challenges.

Biodesign research·2023
Same author

Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation.

mSystems·2023
Same author

Constructive principles for gene editing oversight.

Nature biotechnology·2022
Same author

Analysis of Covid-19 Data for Eight European Countries and the United Kingdom Using a Simplified SIR Model.

Research square·2020
Same author

Analysis of Covid-19 Data for Eight European Countries and the United Kingdom Using a Simplified SIR Model.

medRxiv : the preprint server for health sciences·2020

VisANT is a new, open-source software tool that integrates and visualizes biomolecular interaction data. This system aids researchers in understanding complex cellular functions through interactive graphical analysis of biological networks.

Area of Science:

  • Systems Biology
  • Bioinformatics
  • Computational Biology

Background:

  • Advancements in biomolecular interaction detection generate vast datasets.
  • Cells are increasingly understood as interconnected information networks.
  • A networked view of biology offers potential for systematic understanding of molecular systems.

Purpose of the Study:

  • To present VisANT, a novel application for integrating and visualizing biomolecular interaction data.
  • To provide researchers with a flexible, open-source tool for biological data analysis.
  • To facilitate the systematic understanding of cellular functions through network visualization.

Main Methods:

  • Developed VisANT, a Java-based, platform-independent software.
  • Implemented a multi-tiered architecture separating data retrieval from visualization.

Related Experiment Videos

  • Integrated with standard biological databases (GenBank, KEGG, SwissProt) for annotation.

    • Main Results:

    • VisANT offers a cohesive graphical interface for biomolecular interaction data.
    • The software provides an online interface for published and user-entered datasets.
    • VisANT supports diverse biological applications, including pathway analysis and gene regulation studies.

    Conclusions:

    • VisANT enables interactive visual mining of biological interaction datasets.
    • The tool facilitates the combination, manipulation, and analysis of interaction and association data.
    • VisANT is freely available for researchers studying biological networks and systems biology.