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Updated: Aug 25, 2026

Methyl-binding DNA capture Sequencing for Patient Tissues
Published on: October 31, 2016
Aberrant promoter methylation in human DAB2 interactive protein (hDAB2IP) gene in breast cancer
Hideaki Dote1, Shinichi Toyooka, Kazunori Tsukuda
1Department of Cancer, Graduate School of Medicine and Dentistry, Okayama University, Okayama, Japan.
Purpose:
Human DOC-2/DAB2 interactive protein (hDAB2IP) gene is a novel member of the Ras GTPase-activating family and has been demonstrated to be a tumor suppressor gene inactivated by methylation in prostate cancer. We analyzed methylation and expression status of hDAB2IP in breast cancer.
Experimental Design:
The promoter region of hDAB2IP was divided into two regions (m2a and m2b) following our previous report on prostate cancer, and methylation status was determined in breast cancer cell lines with bisulfited DNA sequencing. Expression was semiquantified with real-time reverse transcription-PCR to find that aberrant methylation showed the inverse relationship with expression. On the basis of sequence data, we developed methylation-specific PCR for m2a and m2b regions and applied to samples.
Results:
Aberrant methylation was detected in 11 of 25 breast cancer cell lines (44%) and 15 of 39 primary tumors (38%) at the m2a region and in 12 of 25 cell lines (48%) and 13 of 39 tumors (33%) at the m2b region. In addition, gene expression was restored in methylated cell lines with 5-aza-2'-deoxycytidine, confirming that methylation caused gene down-regulation. We also examined the relationship between hDAB2IP methylation and clinicopathologic features in primary tumors and found that methylation in the m2b region was associated with progressive nodal status of tumors.
Conclusions:
We developed methylation-specific PCR for hDAB2IP and examined its methylation status in breast cancer. Our results demonstrate that hDAB2IP methylation frequently is present in breast cancer and plays a key role in hDAB2IP inactivation, suggesting the relationship between hDAB2IP methylation and lymph node metastasis of breast cancer.
Insights
Aberrant methylation of the human DOC-2/DAB2 interactive protein (hDAB2IP) gene frequently occurs in breast cancer, leading to gene inactivation. This methylation is linked to lymph node metastasis, suggesting hDAB2IP
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- The human DOC-2/DAB2 interactive protein (hDAB2IP) gene acts as a tumor suppressor.
- hDAB2IP inactivation via methylation is observed in prostate cancer.
- The role of hDAB2IP in breast cancer requires further investigation.
Purpose of the Study:
- To analyze the methylation and expression status of hDAB2IP in breast cancer.
- To develop and apply methylation-specific PCR assays for hDAB2IP in breast cancer samples.
Main Methods:
- Bisulfite DNA sequencing was used to assess hDAB2IP promoter methylation in two regions (m2a and m2b) in breast cancer cell lines.
- Real-time reverse transcription-PCR quantified hDAB2IP expression.
- Methylation-specific PCR assays were developed and applied to cell lines and primary tumors.
- 5-aza-2'-deoxycytidine treatment was used to confirm the effect of methylation on gene expression.
Main Results:
- Aberrant methylation of hDAB2IP was detected in 44-48% of breast cancer cell lines and 33-38% of primary tumors.
- Methylation showed an inverse correlation with hDAB2IP gene expression.
- Gene expression was restored upon treatment with 5-aza-2'-deoxycytidine, confirming methylation-induced silencing.
- hDAB2IP methylation in the m2b region was associated with advanced nodal status in primary breast tumors.
Conclusions:
- Methylation-specific PCR assays for hDAB2IP were successfully developed and utilized in breast cancer.
- Frequent hDAB2IP methylation contributes to gene inactivation in breast cancer.
- hDAB2IP methylation is implicated in the lymph node metastasis of breast cancer.
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