Related Experiment Video
Updated: Aug 24, 2026

A Method to Study the C924T Polymorphism of the Thromboxane A2 Receptor Gene
Published on: April 1, 2019
Coronary artery disease and the thrombospondin single nucleotide polymorphisms
Olga I Stenina1, Tatiana V Byzova, Josephine C Adams
1Joseph J. Jacobs Center for Thrombosis and Vascular Biology and Department of Molecular Cardiology/NB50, Cleveland Clinic Foundation/Lerner Research Institute, 9500 Euclid Avenue, Cleveland, OH 44195, USA.
Insights
GeneQuest identified three thrombospondin gene family single nucleotide polymorphisms (SNPs) strongly linked to premature coronary artery disease. These SNPs significantly alter thrombospondin structure and function, potentially promoting atherosclerosis.
Area of Science:
- Genetics and Cardiovascular Disease Research
Background:
- Familial premature coronary artery disease (CAD) and myocardial infarction (MI) have complex genetic underpinnings.
- High-throughput, large-scale genetic analyses are crucial for identifying disease-associated genes.
Purpose of the Study:
- To identify specific genes associated with familial premature CAD and MI using the GeneQuest analysis.
- To investigate the functional and structural impact of identified single nucleotide polymorphisms (SNPs) within the thrombospondin gene family.
Main Methods:
- Conducted a high-throughput, large-scale analysis of single nucleotide polymorphisms (SNPs) in a cohort with familial premature CAD and MI.
- Utilized predictive analyses and experimental evidence to assess the structural and functional consequences of identified SNPs in thrombospondin-1, -2, and -4.
Main Results:
- Identified three significant SNPs within the thrombospondin gene family (thrombospondin-1, -2, and -4) associated with premature CAD and MI.
- Determined that SNPs in thrombospondin-1 and -4 result in amino acid substitutions, while the thrombospondin-2 SNP is in the 3'-untranslated region.
- Observed altered conformational stability in thrombospondin-1, predicted structural changes in thrombospondin-2 and -4, and functional differences in thrombospondin-4's support of endothelial cell adhesion and proliferation.
Conclusions:
- The identified SNPs in thrombospondin genes show marked effects on protein structure and function.
- These alterations are consistent with a proatherogenic and prothrombotic phenotype, suggesting a role in premature CAD and MI pathogenesis.
- Further research is needed to fully elucidate the mechanisms by which these thrombospondin polymorphic forms influence coronary artery disease.
Abstract:
GeneQuest was a high throughput, large-scale analysis of single nucleotide polymorphisms (SNPs) to identify gene associated with familial, premature coronary artery disease and myocardial infarction. The three SNPs showing the highest and most significant associations with disease were all members of the thrombospondin gene family, thrombospondin-1, thrombospondin-2 and thrombospondin-4. These unanticipated associations have kindled efforts to understand how the three SNPs influence the structures and functions of the thrombospondins. The SNP in thrombospondin-1 and thrombospondin-4 reside in their coding regions and result in single amino acid changes: in thrombospondin-1, the predominant asparagine at position 700 is changed to a serine while, in thrombospondin-4, it is a change of an alanine to a proline at position 387. The SNP in thrombospondin-2 is a base change in the 3'-untranslated region of the mRNA. At this early stage of investigation, predictive analyses suggest that the substitutions in thrombospondin-2 and thrombospondin-4 should alter structure, and there is direct evidence to indicate that the thrombospondin-1 SNP alters conformational stability. In addition, profound differences in the function of the thrombospondin-4 SNP variants have been identified with respect to their capacity to support endothelial cell adhesion and proliferation. While substantial additional information is needed to understand if and how the polymorphic forms of the thrombospondins affect coronary artery disease, the data assembled to date suggest marked effects of these SNPs on the structures and functions of the thrombospondins, which are consistent with induction of a proatherogenic and prothrombotic phenotype.
Related Concept Videos
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu
Single Nucleotide Polymorphisms-SNPs
Pharmacogenetics of Drug Targets: β₂-Adrenergic Receptors, Apo E, Thymidylate Synthase
Coronary Artery Disease II: Pathophysiology
Coronary Artery Disease I: Introduction
Pharmacogenetics of Drug Transporters: P-Glycoprotein and Solute Carrier Transporters