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Updated: Aug 24, 2026

Comet Assay to Quantify DNA Damage in FLT3 Mutant-expressing 32D Cells after Exposure to Type I and Type II FLT3 Inhibitors
Published on: October 17, 2025
Melphalan-induced DNA damage in p53(+/-) and wild type mice analysed by the comet assay
Eugenia Cordelli1, Serena Cinelli, Antonella Lascialfari
1Section of Toxicology and Biomedical Science, ENEA CR Casaccia, Via Anguillarese 301, 00060 Rome, Italy. cordelli@casaccia.enea.it
Abstract:
Melphalan is an alkylating substance used as a therapeutic agent; its mutagenicity is related to its ability to produce monoadducts and to form DNA cross-links. The alkaline comet assay is a useful test for the detection of DNA lesions. However, cross-links are not easily detected under standard conditions. Recently, modifications to the test have been introduced to measure cross-links by evaluating the reduction in induced DNA migration. In this work, the standard comet assay and an assay modified by prolonging the electrophoresis time have been applied to evaluate DNA lesions induced by single, 4 or 26 weekly oral administrations of melphalan to p53(+/-) knockout and to isotype parental mice. Cells were analysed from the liver, bone marrow, peripheral blood and the distal intestine. Moreover, a further protocol in which the presence of cross-links was inferred by the reduction in X-ray-induced DNA migration was applied to bone marrow cells and the sensitivity of the different methods was compared. The majority of groups examined by the standard protocol showed no difference compared to controls, while the modified protocol (prolonged electrophoresis time) could detect a retarded DNA migration in cells from all the organs analysed with the exception of bone marrow cells. Only the protocol based on X-ray in vitro irradiation showed the presence of melphalan-induced cross-links in bone marrow cells exposed to 2mg/kg for 4 weeks, demonstrating that this was the most sensitive approach for detecting this type of lesion. DNA lesions were evident in all the organs analysed. However, results suggest that the kinetics of cross-link repair could be different in bone marrow cells compared to other organs tested. After comparison between genotype-matched treated and control groups, a significant effect was shown more frequently in p53(+/-) than in wild type groups.
Insights
Melphalan causes DNA damage detectable by modified comet assays, with prolonged electrophoresis and X-ray irradiation protocols showing increased sensitivity for detecting DNA cross-links in various mouse tissues.
Area of Science:
- Toxicology
- Molecular Biology
- Genetics
Background:
- Melphalan, an alkylating agent, induces DNA damage through monoadducts and cross-links.
- The alkaline comet assay detects DNA lesions, but standard conditions struggle with cross-link detection.
- Modified comet assays aim to improve the detection of DNA cross-links.
Purpose of the Study:
- To evaluate DNA lesions induced by melphalan using standard and modified alkaline comet assays.
- To compare the sensitivity of different comet assay protocols for detecting melphalan-induced DNA damage and cross-links.
- To investigate the influence of p53 genotype on melphalan-induced DNA damage.
Main Methods:
- Administration of melphalan to p53(+/-) knockout and wild-type mice via weekly oral doses.
- Application of standard alkaline comet assay and a modified version with prolonged electrophoresis time.
- Utilized an additional protocol inferring cross-links by reduction in X-ray-induced DNA migration in bone marrow cells.
Main Results:
- The modified comet assay with prolonged electrophoresis detected DNA migration in most organs, except bone marrow.
- X-ray irradiation protocol identified melphalan-induced cross-links in bone marrow cells, proving most sensitive for this lesion type.
- DNA lesions were observed across all analyzed organs, with p53(+/-) mice showing more frequent significant effects.
Conclusions:
- Modified comet assay protocols enhance the detection of melphalan-induced DNA damage and cross-links.
- Bone marrow cells may exhibit different DNA cross-link repair kinetics compared to other tissues.
- The p53 genotype influences the susceptibility to melphalan-induced genotoxicity.
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