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Updated: Aug 24, 2026

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
The inhibition of tumor growth by triplex-forming oligonucleotides
Richard N Re1, Julia L Cook, Jason F Giardina
1Ochsner Clinic Foundation, 1514 Jefferson Highway, New Orleans, LA 70121, USA. rre@ochsner.org
Abstract:
We have previously shown that oligonucleotides designed to bind in triplex fashion to a specific p53 binding site homology inhibit the proliferation of colon cancer cells in vitro. The present study was designed to extend these observations in an in vivo model. HCT 116 human colon carcinoma cells were injected subcutaneously into Ncr nude mice and tumors formed at one to two weeks. Tumors were injected daily for 14 days with either triplex forming oligonucleotide (Hoog 1), a scrambled Hoog 1 oligonucleotide (Hoog3) as control, or vehicle. Tumor size was measured twice weekly. Active triplex forming oligonucleotide (Hoog1) reduced tumor size in comparison to either control oligonucleotide (Hoog3) or vehicle. Tumor sizes in the three groups were significantly different (P < 0.001). Student Newman Keuls test shows statistically significant differences between the experimental group and each of the control and vehicle groups (P < 0.05). A triplex forming oligonucleotide directed at a p53 consensus binding site reduces tumor growth suggesting a novel method of tumor inhibition.
Insights
A novel triplex-forming oligonucleotide targeting the p53 binding site significantly inhibited colon cancer tumor growth in mice. This DNA-based therapy shows promise for in vivo cancer treatment, reducing tumor size compared to controls.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Oligonucleotides targeting p53 binding sites inhibit colon cancer cell proliferation in vitro.
- Previous research established the in vitro efficacy of triplex-forming oligonucleotides against colon cancer.
Purpose of the Study:
- To evaluate the in vivo efficacy of a triplex-forming oligonucleotide (Hoog1) in a mouse model of human colon cancer.
- To determine if Hoog1 can inhibit tumor growth in a subcutaneous xenograft model.
Main Methods:
- HCT 116 human colon carcinoma cells were implanted subcutaneously in Ncr nude mice.
- Established tumors were treated daily for 14 days with Hoog1, a scrambled control oligonucleotide (Hoog3), or vehicle.
- Tumor size was measured twice weekly to assess growth inhibition.
Main Results:
- The active triplex-forming oligonucleotide (Hoog1) significantly reduced tumor size compared to both the scrambled control (Hoog3) and vehicle groups.
- Statistical analysis confirmed significant differences in tumor sizes among the three groups (P < 0.001).
- Post-hoc tests indicated significant differences between the Hoog1 group and each control group (P < 0.05).
Conclusions:
- A triplex-forming oligonucleotide targeting a p53 consensus binding site effectively reduces tumor growth in an in vivo colon cancer model.
- This suggests a novel therapeutic strategy for inhibiting tumor development using DNA-based interventions.
- The findings support further investigation of triplex oligonucleotides as a potential anti-cancer treatment.
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