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Updated: Aug 24, 2026

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
Published on: July 1, 2020
Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological
Ritu Pandey1, Raghavendra K Guru, David W Mount
1Bioinformatics Core, Arizona Cancer Center, University of Arizona, Tucson, AZ 85724, USA.
Unlabelled:
We have developed a web-based system (Pathway Miner) for visualizing gene expression profiles in the context of biological pathways. Pathway Miner catalogs genes based on their role in metabolic, cellular and regulatory pathways. A Fisher exact test is provided as an option to rank pathways. The genes are mapped onto pathways and gene product association networks are extracted for genes that co-occur in pathways. The networks can be filtered for analysis based on user-selected options.
Availability:
Pathway Miner is a freely available web accessible tool at http://www.biorag.org/pathway.html

