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Updated: Jul 29, 2026

Gene Expression Profiling of Infecting Microbes Using a Digital Bar-coding Platform
Published on: January 13, 2016
Differential gene expression in mononuclear phagocytes infected with pathogenic and non-pathogenic mycobacteria
J A McGarvey1, D Wagner, L E Bermudez
1Kuzell Institute for Arthritis and Infectious Diseases, California Pacific Medical Center Research Institute, San Francisco, CA, USA.
Abstract:
The pathogenic mycobacteria are an insidious group of bacterial pathogens that cause the deaths of millions of people every year. One of the reasons these pathogens are so successful is that they are able to invade and replicate within host macrophages, one of the first lines of defence against intruding pathogens. In contrast, non-pathogenic mycobacteria, such as Mycobacterium smegmatis are killed rapidly by macrophages. In order to understand better the series of events that allow pathogenic mycobacteria to survive and replicate within macrophages, while the non-pathogenic mycobacteria are killed rapidly, we inoculated the human monocytic cell line U937 with pathogenic (M. tuberculosis and M. avium) and non-pathogenic (M. smegmatis) mycobacteria and monitored the expression of over 3500 genes at 4, 12 and 24 h post-inoculation using a commercially available gene array system. We observed multiple differences in the gene expression patterns of monocytes infected with pathogenic and non-pathogenic mycobacteria including genes involved in cytokine, lymphokine and chemokine production, adhesion, apoptosis, signal transduction, transcription, protein cleavage, actin polymerization and growth. We also observed differences in gene expression profiles in monocytes infected with M. tuberculosis or M. avium, indicating that there are differences in the host pathogen interactions of mononuclear phagocytes infected with different pathogenic mycobacterial species. These results increase the understanding of the mechanisms used by pathogenic mycobacteria to cause disease, the host response to these organisms, and provide new insights for antimycobacterial intervention strategies.
Insights
Pathogenic mycobacteria, like Mycobacterium tuberculosis, survive in host macrophages, unlike non-pathogenic strains. Gene expression analysis reveals key differences in host-pathogen interactions, offering insights into disease mechanisms and new treatment strategies.
Area of Science:
- Microbiology
- Immunology
- Genetics
Background:
- Pathogenic mycobacteria successfully evade host immune defenses by invading and replicating within macrophages.
- Non-pathogenic mycobacteria, such as Mycobacterium smegmatis, are typically eliminated by macrophages.
Purpose of the Study:
- To investigate the molecular mechanisms underlying the differential survival of pathogenic versus non-pathogenic mycobacteria within host macrophages.
- To identify host gene expression changes associated with infection by Mycobacterium tuberculosis and Mycobacterium avium.
Main Methods:
- Inoculation of the human monocytic cell line U937 with pathogenic (M. tuberculosis, M. avium) and non-pathogenic (M. smegmatis) mycobacteria.
- Monitoring of over 3500 gene expressions at 4, 12, and 24 hours post-inoculation using a gene array system.
Main Results:
- Significant differences in gene expression profiles were observed between monocytes infected with pathogenic and non-pathogenic mycobacteria.
- Key affected pathways include those involved in cytokine production, cell adhesion, apoptosis, signal transduction, and bacterial growth.
- Distinct gene expression patterns were noted for M. tuberculosis and M. avium infections, indicating species-specific host-pathogen interactions.
Conclusions:
- Pathogenic mycobacteria employ distinct strategies to survive within macrophages, involving modulation of host cellular processes.
- Understanding these differential gene expression patterns provides crucial insights into mycobacterial pathogenesis.
- These findings may inform the development of novel antimycobacterial therapeutic interventions.
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