Related Experiment Video
Updated: Aug 23, 2026

Chromatin Immunoprecipitation Assay for Tissue-specific Genes using Early-stage Mouse Embryos
Published on: April 29, 2011
Identification of a Myb-responsive enhancer of the chicken C/EBPbeta gene
Jörg Kintscher1, Vichanan Yamkamon, Daniel Braas
1Institut für Biochemie, Westfälische-Wilhelms-Universität Münster, Wilhelm-Klemm-Str. 2, D-48149 Münster, Germany.
Abstract:
The retroviral oncogene v-myb encodes a transcription factor (v-Myb) that disrupts myelomonocytic differentiation and transforms myelomonocytic cells. It is thought that the biological effects of v-Myb are caused by deregulation of specific target genes. The CCAAT box/enhancer binding protein beta (C/EBPbeta), a member of the basic region-leucine zipper (bzip) class of transcription factors, which itself plays an important role during myelomonocytic differentiation, has previously been shown to be regulated by Myb. Here we have addressed the mechanism by which v-Myb affects C/EBPbeta expression. We have employed the mapping of DNase I hypersensitive sites (DHSs) in chromatin as a tool to detect in vivo target sites of v-Myb. Our data identify a DHS downstream of the C/EBPbeta gene that appears to be specific for v-myb-transformed myeloblasts. We have confirmed by chromatin immunoprecipitation that v-Myb is bound to this region in vivo. Furthermore, we have found that ectopic expression of v-Myb in a myelomonocytic cell line is able to induce a DHS downstream of the C/EBPbeta gene, showing for the first time that v-Myb can affect chromatin structure. Reporter gene experiments demonstrate that the downstream DHS acts as a Myb-dependent enhancing element in transiently as well as in stably transfected myelomonocytic cells. Previous work has shown that v-Myb acts on the C/EBPbeta promoter; it now appears that Myb stimulates C/EBPbeta expression by acting on the promoter as well as on an enhancer of the C/EBPbeta gene. Interestingly, the mechanisms by which Myb acts on both elements differ; while Myb activation of the promoter requires the cooperation with C/EBPbeta, activation of the enhancer by Myb is independent of C/EBPbeta. Apart from the identification of a novel Myb-dependent enhancer, our work demonstrates the potential of chromatin structure analysis for the identification of Myb target sites.
Insights
The retroviral oncogene v-Myb disrupts cell differentiation by altering gene expression. This study identifies a novel enhancer element regulated by v-Myb, revealing new insights into its mechanism of action in myelomonocytic cells.
Area of Science:
- * Molecular Biology
- * Cancer Biology
- * Gene Regulation
Background:
- * The retroviral oncogene v-myb encodes v-Myb, a transcription factor that disrupts myelomonocytic differentiation and transforms cells.
- * v-Myb's biological effects are attributed to the deregulation of specific target genes, including CCAAT box/enhancer binding protein beta (C/EBPbeta).
- * C/EBPbeta is crucial for myelomonocytic differentiation and is known to be regulated by Myb.
Purpose of the Study:
- * To elucidate the mechanism by which v-Myb affects C/EBPbeta expression.
- * To identify and characterize v-Myb target sites in vivo using chromatin structure analysis.
- * To investigate the role of a novel downstream enhancer element in C/EBPbeta gene regulation by v-Myb.
Main Methods:
- * Mapping of DNase I hypersensitive sites (DHSs) in chromatin to detect in vivo v-Myb target sites.
- * Chromatin immunoprecipitation (ChIP) to confirm v-Myb binding to identified DHSs.
- * Reporter gene assays in transiently and stably transfected myelomonocytic cells to assess enhancer activity.
Main Results:
- * Identification of a novel DHS downstream of the C/EBPbeta gene specific to v-myb-transformed myeloblasts.
- * Confirmation of v-Myb binding to this downstream region in vivo.
- * Demonstration that v-Myb induces this DHS, indicating an effect on chromatin structure.
- * Characterization of the downstream DHS as a Myb-dependent enhancer element.
- * Discovery that v-Myb regulates C/EBPbeta via both promoter and enhancer elements, with distinct mechanisms.
- * Promoter activation requires C/EBPbeta cooperation, while enhancer activation is independent of C/EBPbeta.
Conclusions:
- * v-Myb stimulates C/EBPbeta expression through both promoter and enhancer elements.
- * A novel Myb-dependent enhancer downstream of the C/EBPbeta gene has been identified.
- * v-Myb directly alters chromatin structure to regulate gene expression.
- * Chromatin structure analysis is a valuable tool for identifying transcription factor target sites.
Related Concept Videos
Master Transcription Regulators
Determination
Cell Specific Gene Expression
Position-effect Variegation
