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Updated: Aug 23, 2026

Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
The nuclear bile acid receptor FXR is activated by PGC-1alpha in a ligand-dependent manner
Eiko Kanaya1, Takuma Shiraki, Hisato Jingami
1Department of Molecular Biology, Biomolecular Engineering Research Institute (BERI), 6-2-3 Furuedai, Suita-City, Osaka 565-0874, Japan.
Abstract:
The nuclear bile acid receptor FXR (farnesoid X receptor) is one of the key factors that suppress bile acid biosynthesis in the liver. PGC-1alpha [PPARgamma (peroxisome-proliferator-activated receptor gamma) co-activator-1alpha] is known to control energy homoeostasis in adipose tissue, skeletal muscle and liver. We performed cell-based reporter assays using the expression system of a GAL4-FXR chimaera, the ligand-binding domain of FXR fused to the DNA-binding domain of yeast GAL4, to find the co-activators for FXR. We found that the transcriptional activation of a reporter plasmid by a GAL4-FXR chimaera was strongly enhanced by PGC-1alpha, in a ligand-dependent manner. Transcriptional activation of the SHP (small heterodimer partner) gene by the FXR-RXRalpha (retinoid X receptor alpha) heterodimer was also enhanced by PGC-1alpha in the presence of CDCA (chenodeoxycholic acid). Co-immunoprecipitation and pull-down studies using glutathione S-transferase-PGC-1alpha fusion proteins revealed that the ligand-binding domain of FXR binds PGC-1alpha in a ligand-influenced manner both in vivo and in vitro. Furthermore, our studies revealed that SHP represses its own transcription, and the addition of excess amounts of PGC-1alpha can overcome the inhibitory effect of SHP. These observations indicate that PGC-1alpha mediates the ligand-dependent activation of FXR and transcription of SHP gene.
Insights
Peroxisome-proliferator-activated receptor gamma co-activator-1alpha (PGC-1alpha) enhances the farnesoid X receptor
Area of Science:
- Molecular Biology
- Endocrinology
- Metabolism
Background:
- The farnesoid X receptor (FXR) is a nuclear receptor crucial for regulating bile acid biosynthesis in the liver.
- Peroxisome-proliferator-activated receptor gamma co-activator-1alpha (PGC-1alpha) plays a key role in energy homeostasis across multiple tissues, including the liver.
- Understanding co-activators of FXR is essential for elucidating bile acid metabolism regulation.
Purpose of the Study:
- To identify co-activators that enhance the transcriptional activity of the farnesoid X receptor (FXR).
- To investigate the role of PGC-1alpha as a potential FXR co-activator.
- To explore the interaction between FXR, PGC-1alpha, and the small heterodimer partner (SHP) gene transcription.
Main Methods:
- Cell-based reporter assays utilizing a GAL4-FXR chimera to assess transcriptional activation.
- Co-immunoprecipitation and glutathione S-transferase (GST) pull-down assays to examine in vivo and in vitro protein-protein interactions.
- Analysis of SHP gene transcription in the presence and absence of PGC-1alpha and chenodeoxycholic acid (CDCA).
Main Results:
- PGC-1alpha significantly enhanced the ligand-dependent transcriptional activity of the GAL4-FXR chimera.
- PGC-1alpha potentiated the transcriptional activation of the SHP gene by the FXR-retinoid X receptor alpha (RXRalpha) heterodimer in a CDCA-dependent manner.
- Direct binding between the ligand-binding domain of FXR and PGC-1alpha was observed, influenced by ligand presence.
Conclusions:
- PGC-1alpha acts as a co-activator for FXR, mediating ligand-dependent transcriptional activation.
- PGC-1alpha enhances the transcription of the SHP gene, a known repressor of its own transcription.
- The findings elucidate a novel mechanism by which PGC-1alpha modulates FXR activity and bile acid homeostasis.
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