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Updated: Aug 23, 2026

Visualization of Bacterial Resistance using Fluorescent Antibiotic Probes
Published on: March 2, 2020
[Molecular epidemiology of fluoroquinolone-resistant Streptococcus pneumoniae in Japan]
Shin-ichi Yokota1, Kiyoshi Sato, Shigeru Yoshida
1Department of Microbiology, Sapporo Medical University School of Medicine.
Abstract:
We identified fluoroquinolone-resistant Streptococcus pneumoniae strains among 670 clinical isolates isolated from 1999 to 2003 in Hokkaido prefecture, Japan. All eleven stains were resistant to ciprofloxacin and levofloxacin. Furthermore, ten strains were also resistant to fluoroquinolones that are more effective with gram-positive bacteria, namely tosufloxacin, sparfloxacin, and gatifloxacin. Nucleotide sequence analysis of the quinolone-resistance determining region (QRDR) of the quinolone target genes coding for topoisomerase i.v. subunits (parC and parE) and DNA gyrase subunits (gyrA and gyrB). Eight stains, which showed higher resistance, had resistance mutations in two genes (gyrA and parC, or gyrA and parE), and other three strains had one resistance mutation in parC. The mutation patterns were varied between the strains. Data from random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) indicated that eleven strains were identified as ten independent clones. Lines of evidence indicated that genetic mutations leading to fluoroquinolone resistance occur sporadically rather through the spreading of a particular resistant strain. Notably, the fluoroquinolone-resistant strains were only isolated from adults, particularly from patients more than 60 years of age (9/60 strains; 15.0%). Resistant strains were not found in 574 strains isolates from patients under 20 years of age. This may be due to the fact that fluoroquionolones other than norfloxacin are not applicable to children in Japan.
Insights
Fluoroquinolone resistance in Streptococcus pneumoniae is emerging in Japan, with mutations found in key bacterial genes. This resistance appears to develop sporadically, primarily in older adults.
Area of Science:
- Microbiology
- Genetics
- Pharmacology
Context:
- Emergence of fluoroquinolone resistance in Streptococcus pneumoniae is a growing global health concern.
- Surveillance of antimicrobial resistance is crucial for public health, especially in Japan.
- Previous studies have documented fluoroquinolone resistance in Streptococcus pneumoniae, but specific genetic mechanisms and clonal spread patterns require further investigation.
Purpose:
- To investigate the prevalence and genetic basis of fluoroquinolone resistance in Streptococcus pneumoniae clinical isolates from Hokkaido, Japan.
- To analyze the mutation patterns in target genes (parC, parE, gyrA, gyrB) associated with fluoroquinolone resistance.
- To determine the clonal relatedness of resistant strains using random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR).
Summary:
- Eleven fluoroquinolone-resistant Streptococcus pneumoniae strains were identified from 670 clinical isolates collected between 1999 and 2003 in Hokkaido, Japan.
- All resistant strains showed resistance to ciprofloxacin and levofloxacin, with most also resistant to tosufloxacin, sparfloxacin, and gatifloxacin.
- Genetic analysis revealed mutations in gyrA, parC, or parE genes, with higher resistance linked to mutations in two genes. RAPD-PCR indicated ten independent clones, suggesting sporadic development of resistance rather than clonal spread.
Impact:
- The findings highlight the sporadic emergence of fluoroquinolone resistance in Streptococcus pneumoniae, driven by genetic mutations rather than widespread dissemination of resistant clones.
- The study observed a higher prevalence of resistant strains in adults, particularly those over 60 years old, suggesting age-related susceptibility or exposure patterns.
- This research contributes to understanding the evolving landscape of antibiotic resistance and informs strategies for antimicrobial stewardship, particularly concerning fluoroquinolone use in different age groups.
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