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Updated: Aug 23, 2026

Genome-wide Determination of Mammalian Replication Timing by DNA Content Measurement
Published on: January 19, 2017
ATR and ATM regulate the timing of DNA replication origin firing
David Shechter1, Vincenzo Costanzo, Jean Gautier
1Integrated Program in Cellular, Molecular, and Biophysical Studies, and Department of Genetics and Development, Hammer Health Sciences Center, Columbia University College of Physicians and Surgeons, 701 West 168th Street, New York, NY 10032, USA.
Abstract:
Timing of DNA replication initiation is dependent on S-phase-promoting kinase (SPK) activity at discrete origins and the simultaneous function of many replicons. DNA damage prevents origin firing through the ATM- and ATR-dependent inhibition of Cdk2 and Cdc7 SPKs. Here, we establish that modulation of ATM- and ATR-signalling pathways controls origin firing in the absence of DNA damage. Inhibition of ATM and ATR with caffeine or specific neutralizing antibodies, or upregulation of Cdk2 or Cdc7, promoted rapid and synchronous origin firing; conversely, inhibition of Cdc25A slowed DNA replication. Cdk2 was in equilibrium between active and inactive states, and the concentration of replication protein A (RPA)-bound single-stranded DNA (ssDNA) correlated with Chk1 activation and inhibition of origin firing. Furthermore, ATM was transiently activated during ongoing replication. We propose that ATR and ATM regulate SPK activity through a feedback mechanism originating at active replicons. Our observations establish that ATM- and ATR-signalling pathways operate during an unperturbed cell cycle to regulate initiation and progression of DNA synthesis, and are therefore poised to halt replication in the presence of DNA damage.
Insights
ATM and ATR signaling pathways regulate DNA replication initiation during normal cell cycles. Modulating these pathways controls origin firing and DNA synthesis, preparing cells to halt replication upon DNA damage.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- DNA replication initiation is tightly regulated by S-phase-promoting kinases (SPKs).
- ATM and ATR signaling pathways normally inhibit SPKs (Cdk2, Cdc7) to prevent DNA replication upon damage.
Purpose of the Study:
- To investigate the role of ATM and ATR signaling in regulating DNA replication during an unperturbed cell cycle.
- To understand how these pathways control origin firing and DNA synthesis progression.
Main Methods:
- Inhibition of ATM and ATR using caffeine or neutralizing antibodies.
- Upregulation of Cdk2 or Cdc7.
- Inhibition of Cdc25A.
- Monitoring replication protein A (RPA)-bound single-stranded DNA (ssDNA) and Chk1 activation.
- Assessing ATM activation during replication.
Main Results:
- Inhibition of ATM/ATR or upregulation of Cdk2/Cdc7 accelerated and synchronized origin firing.
- Cdc25A inhibition slowed DNA replication.
- RPA-bound ssDNA levels correlated with Chk1 activation and inhibited origin firing.
- ATM was transiently activated during ongoing replication.
Conclusions:
- ATM and ATR signaling pathways modulate SPK activity via feedback from active replicons.
- These pathways actively regulate DNA synthesis initiation and progression in normal cell cycles.
- The system is poised to halt replication rapidly in response to DNA damage.
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