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SARGE: a tool for creation of putative genetic networks
O J Shaw1, C Harwood, L J Steggles
1School of Computing Science, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK.
Summary:
SARGE is a tool for creating, visualizing and manipulating a putative genetic network from time series microarray data. The tool assigns potential edges through time-lagged correlation, incorporates a clustering mechanism, an interactive visual graph representation and employs simulated annealing for network optimization.
Availability:
The application is available as a .jar file from http://www.bioinformatics.cs.ncl.ac.uk/sarge/index.html.
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