Suppression of bcr-abl synthesis by siRNAs or tyrosine kinase activity by Glivec alters different oncogenes, apoptotic/antiapoptotic genes and cell proliferation factors (microarray study)
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Updated: Aug 23, 2026

Methods for Evaluating the Role of c-Fos and Dusp1 in Oncogene Dependence
Published on: January 7, 2019
Zhivko Zhelev1, Rumiana Bakalova, Hideki Ohba
1Single-Molecule Bioanalysis Laboratory, National Institute for Advanced Industrial Science and Technology, AIST-Shikoku, 2217-14 Hayashi-cho, Takamatsu, Kagawa 761-0395, Japan.
Abstract:
Short 21-mer double-stranded/small-interfering RNAs (ds/siRNAs) were designed to target bcr-abl mRNA in chronic myelogenous leukemia. The ds/siRNAs were transfected into bcr-abl-positive K-562 (derived from blast crisis chronic myelogenous leukemia), using lipofectamine. Penetrating of ds/siRNAs into the cells was detected by fluorescent confocal microscopy, using fluorescein-labeled ds/siRNAs. The cells were treated with mix of three siRNA sequences (3 x 60 nM) during 6 days with three repetitive transfections. The siRNA-treatment was accompanied with significant reduction of bcr-abl mRNA, p210, protein tyrosine kinase activity and cell proliferation index. Treatment of cells with Glivec (during 8 days with four repetitive doses, 180 nM single dose) resulted in analogous reduction of cell proliferation activity, stronger suppression of protein tyrosine kinase activity, and very low reduction of p210. siRNA-mix and Glivec did not affect significantly the viability of normal lymphocytes. Microarray analysis of siRNA- and Glivec-treated K-562 cells demonstrated that both pathways of bcr-abl suppression were accompanied with overexpression and suppression of many different oncogenes, apoptotic/antiapoptotic and cell proliferation factors. The following genes of interest were found to decrease in relatively equal degree in both siRNA- and Glivec-treated cells: Bcd orf1 and orf2 proto-oncogene, chromatin-specific transcription elongation factor FACT 140-kDa subunit mRNA, gene encoding splicing factor SF1, and mRNA for Tec protein tyrosine kinase. siRNA-mix and Glivec provoked overexpression of the following common genes: c-jun proto-oncogene, protein kinase C-alpha, pvt-1 oncogene homologue (myc activator), interleukin-6, 1-8D gene from interferon-inducible gene family, tumor necrosis factor receptor superfamily (10b), and STAT-induced STAT inhibitor.
Insights
Small interfering RNAs (siRNAs) effectively reduced bcr-abl mRNA and proliferation in chronic myelogenous leukemia cells. Both siRNA and Glivec treatments showed distinct gene expression changes without harming normal lymphocytes.
Area of Science:
- Molecular Biology
- Cancer Research
- RNA Therapeutics
Background:
- Chronic myelogenous leukemia (CML) is characterized by the BCR-ABL oncoprotein.
- Targeting BCR-ABL is a key strategy for CML treatment.
- Existing therapies like Glivec have limitations and resistance mechanisms.
Purpose of the Study:
- To investigate the efficacy of small interfering RNAs (siRNAs) targeting BCR-ABL mRNA in CML.
- To compare the molecular effects of siRNA treatment with Glivec in K-562 CML cells.
- To analyze global gene expression changes induced by both therapeutic approaches.
Main Methods:
- Design and transfection of short 21-mer double-stranded/small-interfering RNAs (ds/siRNAs) targeting BCR-ABL mRNA into K-562 cells.
- Detection of ds/siRNA cellular penetration using fluorescent confocal microscopy.
- Treatment of cells with a mix of three siRNA sequences or Glivec, followed by assessment of mRNA levels, protein tyrosine kinase activity, and cell proliferation.
- Microarray analysis to compare gene expression profiles between siRNA- and Glivec-treated cells.
Main Results:
- siRNA treatment significantly reduced BCR-ABL mRNA, p210 protein, tyrosine kinase activity, and cell proliferation.
- Glivec treatment also reduced cell proliferation and tyrosine kinase activity, with minimal impact on p210.
- Both treatments did not significantly affect normal lymphocyte viability.
- Microarray analysis revealed distinct but overlapping gene expression changes, including downregulation of proto-oncogenes and upregulation of inflammatory and signaling pathway genes.
Conclusions:
- siRNAs represent a viable therapeutic strategy for targeting BCR-ABL in CML, offering an alternative to Glivec.
- Both siRNA and Glivec induce complex gene expression alterations, highlighting the multifaceted nature of BCR-ABL pathway modulation.
- Further research into the specific gene targets and pathways affected by these treatments is warranted for optimizing CML therapy.
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