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Updated: Aug 23, 2026

Study of the DNA Damage Checkpoint using Xenopus Egg Extracts
Published on: November 5, 2012
Regulation of DNA replication by ATR: signaling in response to DNA intermediates
David Shechter1, Vincenzo Costanzo, Jean Gautier
1Department of Genetics and Development, Hammer Health Sciences Center, Room 1620, Columbia University College of Physicians and Surgeons, 701 W. 168th Street, New York, NY 10032, USA. ds453@columbia.edu
Abstract:
The nuclear protein kinase ATR controls S-phase progression in response to DNA damage and replication fork stalling, including damage caused by ultraviolet irradiation, hyperoxia, and replication inhibitors like aphidicolin and hydroxyurea. ATR activation and substrate specificity require the presence of adapter and mediator molecules, ultimately resulting in the downstream inhibition of the S-phase kinases that function to initiate DNA replication at origins of replication. The data reviewed strongly support the hypothesis that ATR is activated in response to persistent RPA-bound single-stranded DNA, a common intermediate of unstressed and damaged DNA replication and metabolism.
Insights
The nuclear protein kinase ATR regulates cell cycle progression by responding to DNA damage and stalled replication forks. ATR activation, crucial for DNA repair, is triggered by RPA-bound single-stranded DNA.
Area of Science:
- Cellular biology
- Molecular biology
- Genetics
Background:
- The protein kinase ATR (Ataxia Telangiectasia and Rad3-related) is a key regulator of the DNA damage response.
- ATR controls S-phase progression, preventing genomic instability when cells encounter DNA damage or replication stress.
Purpose of the Study:
- To review the mechanisms of ATR activation and its role in maintaining genome stability.
- To elucidate the molecular triggers for ATR activation during DNA replication and repair.
Main Methods:
- Review of existing literature on ATR signaling pathways.
- Analysis of data concerning DNA replication, DNA damage, and protein interactions.
Main Results:
- ATR activation requires adapter and mediator molecules.
- ATR activation leads to the inhibition of S-phase kinases, preventing DNA replication origin firing.
- Persistent RPA-bound single-stranded DNA is identified as a key activator of ATR.
Conclusions:
- ATR plays a critical role in cell cycle control following DNA damage and replication stress.
- The findings support a model where ATR activation is a direct response to specific DNA structures arising during replication and repair.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Restarting Stalled Replication Forks
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
S-Cdk Initiates DNA Replication
Two states at the origin of replication
In eukaryotes, the initiation of replication occurs at many sites on the chromosomes, called the origins of replication.
Homologous Recombination

