Identification of invasive Yersinia species using oligonucleotide probes

P Feng1

  • 1Division of Microbiology, Food and Drug Administration, Washington, DC 20204.

Insights

Specific oligonucleotide probes accurately identified invasive Yersinia species. The INV-3 probe detected the inv gene in Yersinia pseudotuberculosis, while the PF-13 probe identified the ail gene in Yersinia enterocolitica.

Area of Science:

  • Microbiology
  • Molecular Biology
  • Genetics

Background:

  • Yersinia species are significant human pathogens.
  • Invasion genes like inv and ail are crucial for Yersinia pathogenicity.
  • Accurate identification of invasive strains is vital for clinical and epidemiological purposes.

Purpose of the Study:

  • To develop and validate specific oligonucleotide probes for detecting invasion genes in Yersinia species.
  • To assess the correlation between the presence of inv and ail genes and the invasive capabilities of Yersinia isolates.
  • To differentiate between pathogenic Yersinia species and other bacteria.

Main Methods:

  • Colony hybridization using specific oligonucleotide probes (INV-3 and PF-13).
  • Southern blot analysis of genomic DNA digested with restriction enzymes.
  • Testing probe specificity against Yersinia and non-Yersinia isolates.
  • Correlation of probe reactivity with HeLa cell invasion assays.

Main Results:

  • The INV-3 probe specifically hybridized with all invasive Yersinia pseudotuberculosis isolates (48/48) targeting the inv gene.
  • The PF-13 probe specifically identified invasive Yersinia enterocolitica strains (36/52) by targeting the ail gene.
  • Neither probe showed cross-reactivity with non-Yersinia species or non-invasive Yersinia strains.
  • Southern analyses confirmed probe specificity to known gene fragments (inv: 4.5 kb Bam HI; ail: 1.2 kb Cla I-Ava I).
  • Probe reactivity strongly correlated with the ability of isolates to invade HeLa cells.

Conclusions:

  • Oligonucleotide probes INV-3 and PF-13 are highly specific and sensitive tools for identifying invasive Yersinia pseudotuberculosis and Yersinia enterocolitica, respectively.
  • These probes provide a rapid and reliable method for detecting key virulence genes associated with bacterial invasion.
  • The developed probes can aid in the accurate diagnosis and epidemiological surveillance of Yersinia infections.

Related Concept Videos

Labeling DNA Probes03:31

Labeling DNA Probes

DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Southern Blot02:57

Southern Blot

Agarose gel electrophoresis is very useful in separating DNA fragments by size. Running a DNA ladder containing fragments of the known length alongside the sample helps determine the approximate length of the sample DNA fragments. However, additional steps are needed to verify the sequence identity of the sample DNA fragments.
Denatured DNA fragments must be transferred onto a carrier membrane from the gel to make it accessible to a probe - a small ssDNA fragment complementary to the target DNA...
Methods of Classification and Identification01:28

Methods of Classification and Identification

Bacterial identification relies on a diverse array of techniques to classify and understand microorganisms, each tailored to uncover specific characteristics. Traditional morphological approaches, while still valuable, are limited for closely related or structurally simple organisms. Modern methods integrate biochemical, serological, genetic, and advanced molecular tools to achieve greater accuracy.Morphological and Biochemical TechniquesMorphological characteristics, such as cell shape and...