Related Experiment Video
Updated: Aug 23, 2026

Experimental Analysis of Apoptotic Thymocyte Engulfment by Macrophages
Published on: May 24, 2019
Methods for inducing apoptosis
Kathryn M Roberts1, Antony Rosen, Livia A Casciola-Rosen
1Department of Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Abstract:
Apoptotic cells are sources of tolerogenic material during tissue homeostasis; abnormalities in apoptosis or in the clearance of apoptotic material generate a novel source of antigens against which an autoimmune response may be initiated. In our laboratory, we study the biochemistry and cell biology of systemic autoimmune disease autoantigens during different forms of cell death. Several different methods for inducing apoptosis, and for assaying the induction of this cellular process, are routinely performed. This chapter describes methods for inducing apoptosis via ultraviolet B irradiation, small molecule drug treatments, death receptor ligation, and exposure to granule components of cytotoxic lymphocytes. Assays to confirm the induction of apoptosis by quantifying changes in mitochondrial membrane potential, phosphatidylserine membrane localization, DNA content, and autoantigen cleavage are also detailed.
Insights
Abnormalities in cell death and clearance can trigger autoimmune responses by exposing novel antigens. This study details methods to induce and detect apoptosis, crucial for understanding systemic autoimmune diseases.
Area of Science:
- Immunology
- Cell Biology
- Biochemistry
Background:
- Apoptotic cells normally promote immune tolerance.
- Defects in apoptosis or clearance lead to autoantigen exposure.
- This can initiate autoimmune responses in systemic autoimmune diseases.
Purpose of the Study:
- To investigate the biochemistry and cell biology of autoantigens in systemic autoimmune diseases.
- To describe methods for inducing and assaying apoptosis relevant to autoimmune disease research.
Main Methods:
- Induction of apoptosis using ultraviolet B irradiation, small molecule drugs, death receptor ligation, and cytotoxic lymphocyte granule components.
- Assaying apoptosis by measuring changes in mitochondrial membrane potential, phosphatidylserine localization, DNA content, and autoantigen cleavage.
Main Results:
- Detailed protocols for various apoptosis induction methods are provided.
- Specific assays for confirming apoptosis are described, focusing on key cellular and molecular changes.
Conclusions:
- Understanding apoptosis and its clearance is critical for autoimmune disease pathogenesis.
- The described methods provide a framework for studying autoantigens and cell death in autoimmunity.
Related Concept Videos
Apoptosis
The Intrinsic Apoptotic Pathway
The Extrinsic Apoptotic Pathway
Cellular Injury V: Apoptosis and Autophagy
Overview of Cell Death
Cell death was observed in the early 19th century, but there was no experimental evidence to prove it. In 1842, Carl Vogt first discovered cell death in a metamorphic toad; however, it was not termed ‘cell death.’ Scientists discovered different cell death pathways only in the 20th century...
Phagocytosis of Apoptotic Cells
Normal cells contain receptors that prevent them from being recognized by phagocytes.

