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Published on: July 30, 2014
Backbone dynamics of an oncogenic mutant of Cdc42Hs shows increased flexibility at the nucleotide-binding site
Paul D Adams1, Adrienne P Loh, Robert E Oswald
1Department of Molecular Medicine, College of Veterinary Medicine, Cornell University, Ithaca, New York 14853, USA.
Abstract:
Cdc42Hs, a member of the Ras superfamily of GTP-binding signal transduction proteins, binds guanine nucleotides, and acts as a molecular-timing switch in multiple signal transduction pathways. The structure of the wild-type protein has been solved (Feltham et al. (1997) Biochemistry 36, 8755-8766), and the backbone dynamics have been characterized by NMR spectroscopy (Loh et al. (1999) Biochemistry 38, 12547-12557). The F28L mutation of Cdc42Hs is characterized by an increased rate of cycling between the GTP and GDP-bound forms leading to cell transformation (Lin et al. (1997) Curr. Biol. 7, 794-797). Here, we describe the backbone dynamics of Cdc42Hs(F28L)-GDP using 1H-15N NMR measurements of T1, T1rho, and steady-state NOE at two magnetic field strengths. Residue-specific values of the generalized order parameters (Ss2 and Sf2), local correlation time (tau(e)), and exchange rate (R(ex)) were obtained using the Lipari-Szabo formalism. Chemical-shift perturbation analysis suggested that very little structural change was evident outside of the nucleotide-binding site. However, residues comprising the nucleotide-binding site, as well as the nucleotide itself, exhibit increased dynamics over a wide range of time scales in Cdc42Hs(F28L) relative to the wild type. In addition to changes in dynamics measured by relaxation methods, hydrogen-deuterium exchange indicated a substantial disruption of the hydrogen-bonding network within the nucleotide-binding site. Thus, local dynamic changes introduced by a single-point mutation can affect important aspects of signaling processes without disrupting the conformation of the whole protein.
Insights
The F28L mutation in Cdc42Hs (a Ras-like GTP-binding protein) increases its cycling rate, causing cell transformation. This study reveals increased dynamics and disrupted hydrogen bonds within the nucleotide-binding site due to this mutation.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- Cdc42Hs is a Ras superfamily GTP-binding protein crucial for signal transduction.
- Its function involves acting as a molecular switch, regulated by GTP/GDP binding.
- A specific mutation, F28L, accelerates this cycling and leads to cell transformation.
Purpose of the Study:
- To investigate the backbone dynamics of the Cdc42Hs(F28L)-GDP mutant.
- To understand how the F28L mutation affects protein dynamics and nucleotide binding.
- To correlate dynamic changes with the observed cell transformation phenotype.
Main Methods:
- Nuclear Magnetic Resonance (NMR) spectroscopy, specifically 1H-15N relaxation measurements (T1, T1rho, steady-state NOE).
- Application of the Lipari-Szabo formalism to derive order parameters, local correlation times, and exchange rates.
- Chemical-shift perturbation and hydrogen-deuterium exchange experiments.
Main Results:
- The F28L mutation significantly increased dynamics within the nucleotide-binding site of Cdc42Hs(F28L)-GDP.
- A substantial disruption of the hydrogen-bonding network in the nucleotide-binding site was observed.
- Minimal structural changes were detected outside the nucleotide-binding region.
Conclusions:
- Local dynamic changes induced by a single point mutation can profoundly impact protein signaling.
- The enhanced dynamics and disrupted hydrogen bonding in the nucleotide-binding site are key consequences of the F28L mutation.
- These molecular alterations likely contribute to the cell transformation observed in Cdc42Hs(F28L) mutants.
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