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Related Experiment Videos

PIML: the Pathogen Information Markup Language.

Yongqun He1, Richard R Vines, Alice R Wattam

  • 1Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, 1880 Pratt Drive, Blacksburg, VA 24061-0477, USA. pathinfo@vbi.vt.edu

Bioinformatics (Oxford, England)
|August 7, 2004
PubMed
Summary
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A new standard, Pathogen Information Markup Language (PIML), addresses the lack of data exchange formats for pathogen information. PIML enables better interoperation across infectious disease data systems.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Infectious Disease Research

Background:

  • Vast amounts of pathogen data exist in varied formats.
  • Lack of a community standard hinders data exchange and interoperation.
  • Existing systems for infectious disease data lack interoperability.

Purpose of the Study:

  • To introduce a standardized format for pathogen information.
  • To facilitate data exchange and interoperation among infectious disease information systems.

Main Methods:

  • Development of the Pathogen Information Markup Language (PIML), an XML-based format.
  • Creation of XSLT-based visual presentations for PIML documents.
  • Integration with the ToolBus/PathPort web services federation.

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Main Results:

  • PIML provides a free, open, XML-based standard for pathogen data.
  • Visual presentations and query systems are available via PathInfo website.
  • Detailed PIML documents exist for 21 high-priority pathogens.
  • Ongoing efforts to expand PIML support and document availability.

Conclusions:

  • PIML offers a solution for standardized pathogen information representation.
  • The developed tools and resources enhance accessibility and interoperability of infectious disease data.
  • Continued development aims to broaden the scope and utility of PIML.