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Updated: Aug 23, 2026

Comparative Lesions Analysis Through a Targeted Sequencing Approach
Published on: November 5, 2019
Alterations of the p16INK4a/p14ARF pathway in clear cell sarcoma
Tomonari Takahira1, Yoshinao Oda, Sadafumi Tamiya
1Department of Anatomic Pathology (Second Department of Pathology), Graduate School of Medical Sciences, Kyushu University, Higashi-ku, Fukuoka 812-8582, Japan.
Abstract:
Clear cell sarcoma (CCS) is a very rare soft tissue sarcoma with a poor prognosis. It has become apparent through immunohistochemical, ultrastructural, and microarray analyses that CCS is a soft tissue melanocytic neoplasm. Alterations in the p16INK4a/p14ARF gene are common in malignant melanoma, which is the prototypical melanocytic neoplasm. In the present study, we performed a clinicopathologic analysis and investigated p16 and cyclin D1 expression by immunohistochemistry in 14 cases. Furthermore, we investigated genetic changes of various tumor suppressor genes and an oncogene, including p16INK4a/p14ARF, p53, beta-catenin, and APC, in 11 cases. The 5-year overall survival rate in all the patients was 33.3%. A high mitotic rate was a significant adverse prognostic factor (P = 0.004). Decreased expression of p16 was observed in 4 (28.6%) of 14 cases. Overexpression of cyclin D1 was observed in 9 cases (64.3%). SSCP analysis followed by DNA direct sequencing revealed point mutations of the p16INK4a gene in 2 of 11 cases (18.2%). In addition, one case with the p14ARF mutation and 2 cases with the p53 mutation were observed. None of the cases harbored mutation of the beta-catenin or APC gene. Homozygous deletion of the p16INK4a/p14ARF gene was detected in one case. Methylation-specific PCR did not reveal hypermethylation of the p16INK4a/p14ARF promoter region in any of the cases. Three cases harbored genetic alterations of the p16INK4a/p14ARF gene (27.3%). All tumors with genetic alterations of the p16INK4a/p14ARF or p53 gene showed a high mitotic rate or tumor necrosis. These alterations were considered to be influential in the poor prognosis of CCS patients.
Insights
Clear cell sarcoma (CCS), a rare cancer, is a melanocytic neoplasm. Genetic alterations in tumor suppressor genes like p16INK4a/p14ARF and p53 are linked to poor prognosis in CCS patients.
Area of Science:
- Oncology
- Genetics
- Pathology
Background:
- Clear cell sarcoma (CCS) is a rare soft tissue malignancy with a poor prognosis.
- Recent analyses indicate CCS is a soft tissue melanocytic neoplasm.
- Alterations in the p16INK4a/p14ARF gene are characteristic of malignant melanoma.
Purpose of the Study:
- To conduct a clinicopathologic analysis of CCS.
- To investigate the expression of p16 and cyclin D1.
- To examine genetic alterations in tumor suppressor genes (p16INK4a/p14ARF, p53, beta-catenin, APC) and an oncogene in CCS.
Main Methods:
- Clinicopathologic analysis of 14 CCS cases.
- Immunohistochemistry for p16 and cyclin D1 expression.
- Analysis of genetic alterations including point mutations, homozygous deletion, and promoter methylation of key genes in 11 CCS cases.
Main Results:
- The 5-year overall survival rate was 33.3%.
- High mitotic rate was a significant adverse prognostic factor.
- Decreased p16 expression (28.6%), cyclin D1 overexpression (64.3%), and genetic alterations in p16INK4a/p14ARF (27.3%) and p53 (18.2%) were observed. None had beta-catenin or APC mutations.
Conclusions:
- Genetic alterations in p16INK4a/p14ARF and p53 are associated with aggressive features like high mitotic rate and tumor necrosis in CCS.
- These genetic changes are likely influential factors contributing to the poor prognosis observed in clear cell sarcoma patients.
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