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Updated: Aug 22, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Predicting drug sensitivity and resistance: profiling ABC transporter genes in cancer cells
Gergely Szakács1, Jean-Philippe Annereau, Samir Lababidi
1Laboratory of Cell Biology, Center for Cancer Research, NCI, NIH, Bethesda, MD, 20892, USA. szakacsg@mail.nih.gov
Abstract:
For analysis of multidrug resistance, a major barrier to effective cancer chemotherapy, we profiled mRNA expression of the 48 known human ABC transporters in 60 diverse cancer cell lines (the NCI-60) used by the National Cancer Institute to screen for anticancer activity. The use of real-time RT-PCR avoided artifacts commonly encountered with microarray technologies. By correlating the results with the growth inhibitory profiles of 1,429 candidate anticancer drugs tested against the cells, we identified which transporters are more likely than others to confer resistance to which agents. Unexpectedly, we also found and validated compounds whose activity is potentiated, rather than antagonized, by the MDR1 multidrug transporter. Such compounds may serve as leads for development.
Insights
Researchers analyzed multidrug resistance (MDR) in cancer by profiling ABC transporters in NCI-60 cell lines. They identified transporters conferring resistance and found compounds potentiated by the MDR1 transporter, offering new therapeutic leads.
Area of Science:
- Molecular Biology
- Pharmacology
- Oncology
Background:
- Multidrug resistance (MDR) is a significant challenge in cancer chemotherapy.
- ATP-binding cassette (ABC) transporters play a crucial role in mediating MDR.
Purpose of the Study:
- To analyze mRNA expression of human ABC transporters in the NCI-60 cancer cell line panel.
- To correlate transporter expression with drug sensitivity profiles to identify resistance mechanisms.
- To discover novel drug candidates or strategies to overcome MDR.
Main Methods:
- Real-time RT-PCR was used to profile mRNA expression of 48 human ABC transporters.
- The NCI-60 cancer cell line panel was utilized for comprehensive analysis.
- Growth inhibitory data for 1,429 anticancer drugs were correlated with transporter expression.
Main Results:
- Specific ABC transporters were identified as conferring resistance to particular anticancer agents.
- Unexpectedly, some compounds demonstrated potentiated activity mediated by the MDR1 transporter.
- This suggests a dual role for certain transporters in drug response.
Conclusions:
- The study provides a detailed map of ABC transporter expression in the NCI-60 cell lines.
- It identifies key transporters involved in drug resistance and sensitivity.
- Findings offer potential for developing new therapeutic strategies targeting MDR, including compounds whose efficacy is enhanced by MDR1.
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