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Updated: Aug 22, 2026

Fluorescence-Based Detection of FEN1 Nuclease Activity and Screening of Small-Molecule Inhibitors
Published on: June 27, 2025
The identification and optimization of 2,4-diketobutyric acids as flap endonuclease 1 inhibitors
L Nathan Tumey1, Bayard Huck, Elizabeth Gleason
1Athersys, Inc., 3201 Carnegie Ave., Cleveland, OH 44115, USA. ntumey@athersys.com
Abstract:
There have been several recent reports of chemopotentiation via inhibition of DNA repair processes. Flap endonuclease 1 (FEN1) is a key enzyme involved in base excision repair (BER), a primary pathway utilized by mammalian cells to repair DNA damage. In this report, we describe the identification and SAR of a series of 2,4-diketobutyric acid FEN1 inhibitors.
Insights
Researchers identified novel 2,4-diketobutyric acid compounds that inhibit Flap endonuclease 1 (FEN1). These inhibitors show potential for chemopotentiation by blocking DNA repair pathways in cancer therapy.
Area of Science:
- Biochemistry
- Molecular Biology
- Medicinal Chemistry
Background:
- DNA repair mechanisms are crucial for maintaining genomic stability.
- Inhibition of DNA repair pathways is a promising strategy for cancer chemopotentiation.
- Flap endonuclease 1 (FEN1) is a key enzyme in the Base Excision Repair (BER) pathway.
Purpose of the Study:
- To identify and characterize novel inhibitors of Flap endonuclease 1 (FEN1).
- To explore the structure-activity relationship (SAR) of 2,4-diketobutyric acid derivatives as FEN1 inhibitors.
Main Methods:
- Synthesis of a series of 2,4-diketobutyric acid compounds.
- Biochemical assays to evaluate FEN1 inhibitory activity.
- Structure-activity relationship (SAR) analysis.
Main Results:
- Identification of potent 2,4-diketobutyric acid derivatives as FEN1 inhibitors.
- Detailed SAR studies elucidated key structural features for inhibitory activity.
- Demonstration of FEN1 inhibition by the identified compounds.
Conclusions:
- 2,4-Diketobutyric acid derivatives represent a promising class of FEN1 inhibitors.
- These inhibitors have potential applications in enhancing the efficacy of chemotherapeutic agents.
- Targeting FEN1 via these inhibitors offers a viable strategy for cancer treatment.
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