Molecular cloning and characterization of the translationally controlled tumor protein gene in Bombyx mori

Jae Man Lee1, Takahiro Kusakabe, Yutaka Kawaguchi

  • 1Laboratory of Silkworm Science, Faculty of Agriculture, Kyushu University Graduate School of Bioresource and Bioenvironmental Sciences, Hakozaki 6-10-1, Fukuoka 812-8581, Japan.

Insights

This study decodes the gene for Bombyx mori translationally controlled tumor protein (BmTctp), revealing its widespread expression and complex promoter region. The findings provide insights into Tctp

Area of Science:

  • Molecular Biology
  • Genomics
  • Biochemistry

Background:

  • Translationally controlled tumor protein (Tctp/p23) is upregulated in tumors but also present in normal cells.
  • Understanding Tctp's expression regulation and physiological role is crucial.

Purpose of the Study:

  • To elucidate the molecular basis of Bombyx mori Tctp (BmTctp) expression.
  • To investigate the physiological significance of BmTctp.

Main Methods:

  • Deduction of BmTctp cDNA sequence from EST database.
  • RT-PCR analysis to determine BmTCTP mRNA expression.
  • Inverse PCR to obtain the genomic clone.
  • Sequence analysis of the 5'-flanking region.
  • Luciferase reporter assay for promoter activity.

Main Results:

  • BmTCTP mRNA is transcribed in all larval organs and consistently expressed during the cell cycle.
  • The BmTCTP gene contains two introns and three exons.
  • The 5'-flanking region possesses a TATA-less promoter with elements like GATA box, CCAAT, MEF2, E4BP4.01, and AP-1.
  • A specific region (-676 to +66) significantly enhances promoter activity.
  • The promoter contains enhancer and repressor elements.

Conclusions:

  • The BmTctp gene has a complex, TATA-less promoter structure.
  • Multiple regulatory elements control BmTctp gene expression.
  • BmTctp exhibits broad expression, suggesting diverse physiological roles.

Related Concept Videos

Initiation of Translation02:33

Initiation of Translation

Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Reporter Genes02:11

Reporter Genes

Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
Commonly used reporter...
Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...