Autoregulation of the N-myc gene is operative in neuroblastoma and involves histone deacetylase 2
Related Experiment Video
Updated: Aug 22, 2026

A Chromatin Immunoprecipitation Assay to Identify Novel NFAT2 Target Genes in Chronic Lymphocytic Leukemia
Published on: December 4, 2018
Marianne K H Kim1, William L Carroll
1The Molecular, Cellular, Biochemical, and Developmental Sciences, Mount Sinai School of Medicine, New York, New York, USA.
Background:
Autoregulation of the myc gene family is a negative feedback mechanism known to occur at high levels of Myc expression. Loss of this mechanism and associated Myc overexpression has been observed in human tumors, thereby contributing to tumorigenesis. The childhood tumor neuroblastoma is characterized by N-myc amplification in aggressive and highly proliferative tumors that occur in a subset of patients. The precise molecular mechanism of autoregulation is unknown, and previous observations indicated that N-myc autoregulation was intact only in single-copy neuroblastoma cell lines.
Methods:
Transient reporter assays and trichostatin A (TSA) experiments were performed to evaluate several candidate genes, including Mxi1, c-myc promoter binding protein 1 (MBP-1), Miz, and histone deacetylase 2 (HDAC2), for their involvement in N-myc autoregulation. Mxi1 and HDAC2 were examined further for their expression levels and effects on endogenous N-myc levels. Finally, their recruitments to the N-myc promoter were investigated by chromatin immunoprecipitation (ChIP).
Results:
The autoregulatory circuit was operative, even in amplified cell lines. Mxi1 consistently showed a modest effect in down-regulating N-myc in transient reporter assays. Overexpression of the c-myc, Mxi1, and mHDAC2 genes resulted in a threefold to fourfold decrease in endogenous N-myc levels. Mxi1 and HDAC2 were up-regulated by N-Myc in an myc-inducible cell line and in N-myc-expressing cell lines. In addition, down-regulation of the N-myc promoter was relieved in the presence of TSA. Increased association of HDAC2 with the autoregulatory region within the N-myc promoter by ChIP was observed upon down-regulation of endogenous N-myc.
Conclusions:
The autoregulatory circuit was intact in both amplified and single-copy neuroblastoma cell lines. Furthermore, myc gene autoregulation occurred through histone deacetylation.
Insights
Neuroblastoma’s N-myc gene autoregulation is intact in amplified cell lines and occurs via histone deacetylation, involving Mxi1 and HDAC2. This finding clarifies a key mechanism in aggressive tumor development.
Area of Science:
- Molecular Biology
- Cancer Genetics
- Epigenetics
Background:
- The myc gene family, including N-myc, is crucial in cell proliferation and is often dysregulated in cancer.
- Autoregulation of myc genes is a negative feedback loop that normally limits Myc expression.
- Loss of this autoregulation contributes to tumorigenesis, particularly in aggressive neuroblastoma with N-myc amplification.
Purpose of the Study:
- To investigate the molecular mechanism of N-myc autoregulation in neuroblastoma.
- To determine if the autoregulatory circuit is functional in N-myc amplified neuroblastoma cell lines.
- To identify specific genes and epigenetic modifications involved in N-myc autoregulation.
Main Methods:
- Transient reporter assays were used to assess the function of candidate genes (Mxi1, MBP-1, Miz, HDAC2).
- Trichostatin A (TSA) was employed to investigate the role of histone deacetylases.
- Chromatin immunoprecipitation (ChIP) was utilized to examine gene recruitment to the N-myc promoter.
Main Results:
- The N-myc autoregulatory circuit was found to be operative even in N-myc amplified neuroblastoma cell lines.
- Mxi1 and histone deacetylase 2 (HDAC2) were identified as key players, with their overexpression decreasing N-myc levels.
- HDAC2 recruitment to the N-myc promoter increased upon N-myc down-regulation, and TSA treatment affected this process, indicating a role for histone deacetylation.
Conclusions:
- The N-myc autoregulatory circuit is intact in both amplified and single-copy neuroblastoma cell lines.
- Myc gene autoregulation in neuroblastoma proceeds through histone deacetylation, mediated by factors like HDAC2.
- These findings provide critical insights into the molecular basis of aggressive neuroblastoma.
Related Concept Videos
Master Transcription Regulators
Abnormal Proliferation
mTOR Signaling and Cancer Progression
The mTOR pathway or the...
Epigenetic Regulation
X-chromosome...
Epigenetic Regulation
Induced Pluripotent Stem Cells
Somatic cells are...
