Related Experiment Videos
Solution of the quasispecies model for an arbitrary gene network
Emmanuel Tannenbaum1, Eugene I Shakhnovich
1Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, USA. etannenb@fas.harvard.edu
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
|September 28, 2004
Summary
This study reveals gene networks undergo an "error cascade" of transitions, not a single catastrophe, as mutation rates increase. This cascade leads to gene delocalization and eventual genome-wide error catastrophe.
Area of Science:
- Evolutionary Biology
- Theoretical Biology
- Genetics
Background:
- Eigen's quasispecies model describes error catastrophe in molecular evolution.
- Gene networks involve multiple interacting genes, each with a master sequence.
- Understanding genome stability under mutation is crucial for evolutionary dynamics.
Purpose of the Study:
- To investigate the equilibrium behavior of quasispecies equations for arbitrary gene networks.
- To analyze the impact of mutation rates on gene functionality and genome stability.
- To identify transitions in gene network behavior beyond a single error catastrophe.
Main Methods:
- Applied Eigen's quasispecies equations to a multi-gene genome model.
- Assumed a single fitness peak model for each individual gene.
- Analyzed model behavior in the limit of infinite sequence length.
Main Results:
- Observed a series of localization-delocalization transitions, termed an 'error cascade', instead of a single error catastrophe.
- Increased mutation rates lead to loss of selective advantage and delocalization of gene populations.
- The network progressively inactivates genes through sequential transitions until genome-wide delocalization.
Conclusions:
- The 'error cascade' model predicts sequential gene inactivation and provides criteria for loss of functionality.
- Offers insights into gene network responses to mutagens and relative gene importance.
- Implications for mutational robustness and 'survival of the flattest' concepts in evolution.