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Energy localization in the Peyrard-Bishop DNA model
Jayme De Luca1, Elso Drigo Filho, Antonio Ponno
1Universidade Federal de São Carlos, Departamento de Física, Rodovia Washington Luis, km 235, São Carlos,13565-905-São Paulo, Brazil. deluca@df.ufscar.br
Abstract:
We study energy localization on the oscillator chain proposed by Peyrard and Bishop to model DNA. We search numerically for conditions with initial energy in a small subgroup of consecutive oscillators of a finite chain and such that the oscillation amplitude is small outside this subgroup on a long time scale. We use a localization criterion based on the information entropy and verify numerically that such localized excitations exist when the nonlinear dynamics of the subgroup oscillates with a frequency inside the reactive band of the linear chain. We predict a mimium value for the Morse parameter (micro>2.25) (the only parameter of our normalized model), in agreement with the numerical calculations (an estimate for the biological value is micro=6.3 ). For supercritical masses, we use canonical perturbation theory to expand the frequencies of the subgroup and we calculate an energy threshold in agreement with the numerical calculations.
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