Hsp104 binds to yeast Sup35 prion fiber but needs other factor(s) to sever it

Yuji Inoue1, Hideki Taguchi, Aiko Kishimoto

  • 1Chemical Resources Laboratory, Tokyo Institute of Technology, 4259 Nagatuta, Yokohama 226-8503, Japan.

Insights

Heat shock protein 104 (Hsp104) interacts with yeast prion fibers. Hsp104 alone does not sever fibers; cytosolic factors are required for Hsp104-mediated fragmentation, suggesting distinct prion fiber conformations.

Area of Science:

  • Protein biochemistry
  • Molecular biology
  • Yeast genetics

Background:

  • Yeast prions, such as those formed by Sup35NM, are self-propagating protein aggregates.
  • Hsp104 is a key chaperone involved in prion propagation and remodeling in yeast.
  • Previous studies suggested Hsp104 alone can sever prion fibers.

Purpose of the Study:

  • To investigate the interaction of Hsp104 with yeast prion fibers.
  • To determine the conditions required for Hsp104-mediated prion fiber fragmentation.
  • To explore the heterogeneity of yeast prion fibers.

Main Methods:

  • Fluorescent labeling of Hsp104 to visualize its interaction with Sup35NM fibers.
  • Monitoring fiber formation kinetics in the presence of Hsp104.
  • Assessing fiber fragmentation using bead-tethered assays with Hsp104, yeast cell lysate, and Hsp104-deficient lysate.

Main Results:

  • Hsp104 uniformly decorated preformed Sup35NM fibers, with varying fluorescence density suggesting fiber subspecies.
  • Hsp104 delayed the de novo formation of Sup35NM fibers.
  • Hsp104 alone did not fragment fibers; ATP-dependent fragmentation required additional factors present in yeast cytosol.

Conclusions:

  • Yeast prion fibers exhibit heterogeneity in their structure.
  • Hsp104 requires co-factors from the yeast cytosol for prion fiber severing activity.
  • Discrepancies with prior reports may arise from differences in prion fiber conformational states used in experiments.

Related Concept Videos

Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
Yeast Signaling01:28

Yeast Signaling

Yeasts are single-celled organisms, but unlike bacteria, they are eukaryotes (cells with a nucleus). Cell signaling in yeast is similar to signaling in other eukaryotic cells. A ligand, such as a protein or a small molecule released from a yeast cell, attaches to a receptor on the cell surface. The binding stimulates second-messenger kinases to activate or inactivate transcription factors that further regulate gene expression. Many of the yeast intracellular signaling cascades have similar...
Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
Tail-anchoring of Proteins in the ER Membrane01:45

Tail-anchoring of Proteins in the ER Membrane

Tail-anchored, or TA, proteins are estimated to make up to 3-5% of membrane proteins found in the eukaryotic cell. Such proteins have a single transmembrane domain located approximately 30 amino acid residues upstream from the C-terminal end. As a result, the signal recognition particle (SRP) cannot guide a TA protein to the ER membrane for cotranslational insertion. Hence, they are integrated into the ER membrane post-translationally using their C-terminal end as the anchor. TA proteins...