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Updated: Aug 21, 2026

Purification of Hsp104, a Protein Disaggregase
Published on: September 30, 2011
Hsp104 binds to yeast Sup35 prion fiber but needs other factor(s) to sever it
Yuji Inoue1, Hideki Taguchi, Aiko Kishimoto
1Chemical Resources Laboratory, Tokyo Institute of Technology, 4259 Nagatuta, Yokohama 226-8503, Japan.
Abstract:
The interaction of Hsp104 with yeast prion fibers made of Sup35NM, a prion-inducing domain of Sup35, was tested. When fluorescently labeled Hsp104 was added to the preformed fibers, individual fibers were fluorescently decorated uniformly along the fiber length. However, the density of fluorescence differed from one fiber to another, indicating the presence of subspecies of Sup35NM fibers. The time course of fiber formation from monomer Sup35NM was delayed by Hsp104. Hsp104-mediated fragmentation of fibers was tested using bead-tethered fibers. In contrast with the recent report (Shorter, J., and Lindquist, S. (2004) Science 304, 1793-1797), Hsp104 alone was unable to sever the fibers. Yeast cell lysate or the Hsp104-deficient cell lysate plus Hsp104 caused ATP-dependent, guanidine hydrochloride-sensitive fragmentation of the fibers. Thus, in our experimental setup, Hsp104 plus other factor(s) in the yeast cytosol are required for severing yeast prion fiber. The reason of discrepancy from the above report is unknown but is possibly caused by different conformational subspecies of prion fibers.
Insights
Heat shock protein 104 (Hsp104) interacts with yeast prion fibers. Hsp104 alone does not sever fibers; cytosolic factors are required for Hsp104-mediated fragmentation, suggesting distinct prion fiber conformations.
Area of Science:
- Protein biochemistry
- Molecular biology
- Yeast genetics
Background:
- Yeast prions, such as those formed by Sup35NM, are self-propagating protein aggregates.
- Hsp104 is a key chaperone involved in prion propagation and remodeling in yeast.
- Previous studies suggested Hsp104 alone can sever prion fibers.
Purpose of the Study:
- To investigate the interaction of Hsp104 with yeast prion fibers.
- To determine the conditions required for Hsp104-mediated prion fiber fragmentation.
- To explore the heterogeneity of yeast prion fibers.
Main Methods:
- Fluorescent labeling of Hsp104 to visualize its interaction with Sup35NM fibers.
- Monitoring fiber formation kinetics in the presence of Hsp104.
- Assessing fiber fragmentation using bead-tethered assays with Hsp104, yeast cell lysate, and Hsp104-deficient lysate.
Main Results:
- Hsp104 uniformly decorated preformed Sup35NM fibers, with varying fluorescence density suggesting fiber subspecies.
- Hsp104 delayed the de novo formation of Sup35NM fibers.
- Hsp104 alone did not fragment fibers; ATP-dependent fragmentation required additional factors present in yeast cytosol.
Conclusions:
- Yeast prion fibers exhibit heterogeneity in their structure.
- Hsp104 requires co-factors from the yeast cytosol for prion fiber severing activity.
- Discrepancies with prior reports may arise from differences in prion fiber conformational states used in experiments.
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