Related Experiment Video
Updated: Aug 14, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
[Human ribosomal protein S26 inhibits splicing of its own pre-mRNA]
Abstract:
In vitro splicing was studied for a human ribosomal protein (rp) S26 pre-mRNA fragment containing the first exon, first intron, and a part of the second exon. Splicing yielded two products, the first was corresponded to a fragment of the mature rpS26 mRNA and another was retained the 19 3'-terminal nucleotides of the first intron between the first and second exons. Recombinant rpS26 inhibites generation of both splicing products in vitro. The inhibition was specific, because another recombinant human rp, S19, had no effect on the splicing of the pre-mRNA fragment. Toe-printing was used to map the spS26-binding sites of the per-mRNA within the regions of the conventional and alternative 3' splicing sites of the first intron. On the strength of the rusults, rpS26 was assumed to regulate the expression of its own gene at the level of pre-mRNA splicing via a feedback mechanism.
Insights
Human ribosomal protein S26 (rpS26) inhibits its own pre-mRNA splicing in vitro. This finding suggests rpS26 regulates its gene expression through a feedback mechanism at the splicing level.
Area of Science:
- Molecular Biology
- Gene Regulation
- RNA Splicing
Context:
- Investigating the post-transcriptional regulation of human ribosomal protein S26 (rpS26).
- Examining the in vitro splicing of a specific rpS26 pre-mRNA fragment.
- Understanding the role of proteins in modulating mRNA processing.
Purpose:
- To determine if rpS26 influences its own pre-mRNA splicing.
- To identify the mechanism by which rpS26 might regulate its gene expression.
- To map the binding sites of rpS26 on its pre-mRNA.
Summary:
- In vitro splicing of a human rpS26 pre-mRNA fragment produced mature mRNA and a product with retained intron sequence.
- Recombinant rpS26 specifically inhibited both splicing products.
- Toe-printing analysis identified rpS26 binding sites near conventional and alternative 3' splice sites within the intron.
Impact:
- Suggests a novel feedback mechanism for rpS26 gene expression regulation.
- Highlights the role of rpS26 in controlling its own mRNA processing.
- Provides insights into autoregulation of ribosomal protein synthesis.
Related Concept Videos
RNA Splicing
RNA Splicing
Nonsense-mediated mRNA Decay
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Riboswitches
The aptamer has high specificity for a particular metabolite which allows riboswitches to specifically regulate...
Alternative RNA Splicing
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
Alternative RNA Splicing
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...

