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Published on: July 22, 2012
Improved diagnosis on a daily basis of enterovirus meningitis using a one-step real-time RT-PCR assay
Christine Archimbaud1, Audrey Mirand, Martine Chambon
1Laboratoire de Virologie Médicale du Centre Hospitalier Universitaire, Faculté de Médecine, Clermont-Ferrand Cedex 1, France. carchimbaud@chu-clermontferrand.fr
Abstract:
The detection of the enterovirus genome in cerebrospinal fluid (CSF) by PCR techniques has proved to be more sensitive than traditional cell culture for the diagnosis of enterovirus meningitis. However, PCR assays are time consuming and labor intensive, particularly if separate hybridization steps are used to confirm the specificity of positive findings. The aim of this study was to develop a one-step real-time RT-PCR assay with LightCycler (LC) technology that was sensitive, rapid, and easy to perform in routine practice. The enterovirus detection limit was determined by testing 10-fold limiting dilution series of cell culture stocks with the echovirus 25 (E-25) prototype strain and with the third European Union Quality Control Concerted Action (EU-QCCA) enterovirus proficiency panel. A total of 100 CSF specimens were investigated in a comparative study. With the E-25 strain, the detection limit of the real-time assay was 286 TCID50/ml (50% tissue culture infective dose). When samples of the EU-QCCA panel were tested, our assay gave identical results (detection limit down to 3.6 TCID50/ml) to those of the reference laboratory, which used one-step RT-PCR assay. When CSF specimens were tested, there was a correlation between the real-time assay and the conventional in-house assay in 96 of 100 CSFs tested. This one-step real-time assay allows rapid enterovirus detection in CSF since results are obtained in 3 hr as against 36 hr with the "in-house" RT-PCR assay. This new assay is now being used in routine practice, and allows diagnosis on a daily basis.
Insights
A new one-step real-time RT-PCR assay offers rapid and sensitive detection of enterovirus meningitis in cerebrospinal fluid (CSF). This method significantly reduces diagnostic time compared to traditional PCR, aiding daily clinical practice.
Area of Science:
- Virology
- Molecular Diagnostics
- Infectious Diseases
Background:
- Enterovirus meningitis diagnosis traditionally relies on PCR, which is sensitive but time-consuming.
- Conventional PCR requires separate hybridization steps, increasing labor and time for specificity confirmation.
- Existing methods pose challenges for rapid, routine diagnosis in clinical settings.
Purpose of the Study:
- To develop a sensitive, rapid, and user-friendly one-step real-time RT-PCR assay for enterovirus detection.
- To implement LightCycler (LC) technology for enhanced efficiency in enterovirus diagnostics.
- To facilitate timely diagnosis of enterovirus meningitis in clinical practice.
Main Methods:
- Developed a one-step real-time RT-PCR assay utilizing LightCycler technology.
- Determined assay sensitivity using serial dilutions of echovirus 25 (E-25) and an enterovirus proficiency panel.
- Compared the real-time assay performance against a conventional in-house RT-PCR assay using 100 CSF specimens.
Main Results:
- The real-time assay detected as low as 286 TCID50/ml of E-25 and 3.6 TCID50/ml with the EU-QCCA panel.
- Achieved results consistent with a reference laboratory's one-step RT-PCR assay.
- Demonstrated a 96% correlation with the conventional assay in 100 CSF samples.
- Reduced turnaround time to 3 hours from 36 hours compared to the in-house assay.
Conclusions:
- The developed one-step real-time RT-PCR assay is highly sensitive and rapid for enterovirus detection in CSF.
- This assay simplifies the diagnostic process, making it suitable for routine clinical use.
- Enables daily diagnosis of enterovirus meningitis, improving patient management.
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