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Updated: Aug 21, 2026

Time-Resolved Fluorescence Anisotropy from Single Molecules for Characterizing Local Flexibility in Biomolecules
Published on: April 25, 2025
Identifiability analysis of models for reversible intermolecular two-state excited-state processes coupled with
Jacek P Szubiakowski1, Robert E Dale, Noël Boens
1Biomedisch Onderzoeksinstituut, Limburgs Universitair Centrum, School of Life Sciences, transnationale Universiteit Limburg, 3590 Diepenbeek, Belgium.
Abstract:
A deterministic identifiability analysis of the kinetic model for a reversible intermolecular two-state excited-state process with species-dependent rotational diffusion described by Brownian reorientation is presented. The cases of both spherically and cylindrically symmetric rotors, with no change in the principal axes of rotation on interconversion in the latter case, are specifically considered. The identifiability analysis is carried out in terms of compartmental modeling based on the S(t) identical with I( parallel)(t)+2I( perpendicular)(t) and D(t) identical with I( parallel)(t)-I( perpendicular)(t) functions, where I( parallel)(t) and I( perpendicular)(t) are the delta-response functions for fluorescence, polarized, respectively, parallel and perpendicular to the electric vector of linearly polarized excitation. It is shown that, from polarized time-resolved fluorescence data collected at two concentrations of coreactant and three appropriately chosen emission wavelengths, (a) a unique set of rate constants for the overall excited-state process is always obtained by making use of polarized measurements and (b) the rotational diffusion constants and geometrical factors associated with the different anisotropy decay components can be uniquely determined and assigned to each species. The geometrical factors are determined by the absorption and emission transitions in the two rotating species. For spherical rotors, these factors depend directly on the relative orientations of the transition moments, while for cylindrically symmetric rotors they depend on the orientations with respect to each other and to the symmetry axis.
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