Periplasmic cleavage and modification of the 1-phosphate group of Helicobacter pylori lipid A
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Updated: Aug 21, 2026

Isolation and Chemical Characterization of Lipid A from Gram-negative Bacteria
Published on: September 16, 2013
An X Tran1, Mark J Karbarz, Xiaoyuan Wang
1Department of Microbiology, J. H. Quillen College of Medicine, Johnson City, TN 37614, USA.
Abstract:
Pathogenic bacteria modify the lipid A portion of their lipopolysaccharide to help evade the host innate immune response. Modification of the negatively charged phosphate groups of lipid A aids in resistance to cationic antimicrobial peptides targeting the bacterial cell surface. The lipid A of Helicobacter pylori contains a phosphoethanolamine (pEtN) unit directly linked to the 1-position of the disaccharide backbone. This is in contrast to the pEtN units found in other pathogenic Gram-negative bacteria, which are attached to the lipid A phosphate group to form a pyrophosphate linkage. This study describes two enzymes involved in the periplasmic modification of the 1-phosphate group of H. pylori lipid A. By using an in vitro assay system, we demonstrate the presence of lipid A 1-phosphatase activity in membranes of H. pylori. In an attempt to identify genes encoding possible lipid A phosphatases, we cloned four putative orthologs of Escherichia coli pgpB, the phosphatidylglycerol-phosphate phosphatase, from H. pylori 26695. One of these orthologs, Hp0021, is the structural gene for the lipid A 1-phosphatase and is required for removal of the 1-phosphate group from mature lipid A in an in vitro assay system. Heterologous expression of Hp0021 in E. coli resulted in the highly selective removal of the 1-phosphate group from E. coli lipid A, as demonstrated by mass spectrometry. We also identified the structural gene for the H. pylori lipid A pEtN transferase (Hp0022). Mass spectrometric analysis of the lipid A isolated from E. coli expressing Hp0021 and Hp0022 shows the addition of a single pEtN group at the 1-position, confirming that Hp0022 is responsible for the addition of a pEtN unit at the 1-position in H. pylori lipid A. In summary, we demonstrate that modification of the 1-phosphate group of H. pylori lipid A requires two enzymatic steps.
Insights
Helicobacter pylori modifies its lipid A using two enzymes, Hp0021 and Hp0022, to evade the immune system. This involves removing a phosphate group and adding phosphoethanolamine (pEtN) at the 1-position.
Area of Science:
- Microbiology
- Biochemistry
- Immunology
Background:
- Pathogenic bacteria evade host immunity by altering lipopolysaccharide (LPS) lipid A.
- Lipid A modifications, like phosphate group changes, enhance resistance to antimicrobial peptides.
- Helicobacter pylori uniquely attaches phosphoethanolamine (pEtN) at the lipid A 1-position.
Purpose of the Study:
- Identify enzymes responsible for modifying the 1-phosphate group of H. pylori lipid A.
- Characterize the enzymatic steps involved in H. pylori lipid A modification.
- Investigate the roles of Hp0021 and Hp0022 in H. pylori lipid A biosynthesis.
Main Methods:
- In vitro enzymatic assays using H. pylori membranes.
- Gene cloning and heterologous expression in Escherichia coli.
- Mass spectrometry analysis of modified lipid A structures.
Main Results:
- Demonstrated lipid A 1-phosphatase activity in H. pylori membranes.
- Identified Hp0021 as the gene encoding the lipid A 1-phosphatase.
- Confirmed Hp0022 as the gene for H. pylori lipid A pEtN transferase.
- Showed selective removal of the 1-phosphate group by Hp0021 and pEtN addition by Hp0022.
Conclusions:
- Two enzymes, Hp0021 (phosphatase) and Hp0022 (pEtN transferase), modify H. pylori lipid A at the 1-position.
- These modifications are crucial for H. pylori immune evasion strategies.
- The study elucidates a unique lipid A modification pathway in H. pylori.
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