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Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 18, 2019
Prostate cancer is characterized by epigenetic silencing of 14-3-3sigma expression
Dimitri Lodygin1, Joachim Diebold, Heiko Hermeking
1Molecular Oncology, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, D-82152 Martinsried/Munich, Germany.
Abstract:
In order to identify tumor suppressive genes silenced by CpG methylation in prostate carcinoma (PCa), we determined genome-wide expression changes after pharmacological reversal of CpG methylation-mediated transcriptional repression in three PCa cell lines using microarray analysis. Thereby, epigenetic silencing of the 14-3-3sigma gene was detected in the cell line LNCaP. 14-3-3sigma encodes a p53-regulated inhibitor of cell cycle progression. Laser microdissection was used to isolate different cell types present in diseased prostatic tissue. Subsequent methylation-specific PCR analysis showed CpG methylation of 14-3-3sigma in all 41 primary PCa samples analysed, which was accompanied by a decrease or loss of 14-3-3sigma protein expression. In contrast, normal prostate epithelial and benign prostate hyperplasia cells showed high levels of 14-3-3sigma expression. PCa-precursor lesions (prostatic intraepithelial neoplasia) also displayed decreased levels of 14-3-3sigma expression in luminal cells, which are known to contain shortened telomeres. RNA interference-mediated inactivation of 14-3-3sigma compromised a DNA damage-induced G(2)/M arrest in the PCa cell line PC3. The generality of CpG methylation and downregulation of 14-3-3sigma expression in PCa suggests that it significantly contributes to the formation of PCa, potentially by allowing the escape from a DNA damage-induced arrest elicited by telomere shortening.
Insights
CpG methylation silences the tumor suppressive 14-3-3sigma gene in prostate cancer (PCa), leading to decreased expression and potentially promoting tumor development by enabling cell cycle escape.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Prostate carcinoma (PCa) is a significant health concern.
- CpG methylation is a key epigenetic mechanism involved in cancer development.
- Tumor suppressive genes can be silenced by aberrant methylation patterns.
Purpose of the Study:
- To identify tumor suppressive genes silenced by CpG methylation in prostate cancer.
- To investigate the role of 14-3-3sigma gene epigenetic silencing in PCa progression.
Main Methods:
- Genome-wide expression analysis using microarray after pharmacological reversal of CpG methylation.
- Laser microdissection to isolate prostatic tissue cell types.
- Methylation-specific PCR analysis to detect 14-3-3sigma CpG methylation.
- RNA interference to assess the functional impact of 14-3-3sigma inactivation.
Main Results:
- Epigenetic silencing of the 14-3-3sigma gene was detected in PCa cell lines.
- CpG methylation of 14-3-3sigma was found in all analyzed primary PCa samples, correlating with decreased protein expression.
- Normal prostate and benign hyperplasia cells exhibited high 14-3-3sigma expression, while PCa precursor lesions showed reduced levels.
- Inactivation of 14-3-3sigma impaired DNA damage-induced cell cycle arrest.
Conclusions:
- CpG methylation and subsequent downregulation of 14-3-3sigma expression are common in prostate cancer.
- This epigenetic silencing likely contributes to PCa development by facilitating escape from DNA damage-induced cell cycle arrest, potentially linked to telomere shortening.
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