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Updated: Aug 21, 2026

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
Nuclear-cytoplasmic shuttling of the oncogenic mouse UNP/USP4 deubiquitylating enzyme
Tatiana A Soboleva1, David A Jans, Melanie Johnson-Saliba
1Molecular Genetics Group, John Curtin School of Medical Research, Australian National University, Canberra, Australian Capital Territory 0200, Australia.
Abstract:
The oncogenic deubiquitylating enzyme (DUB) Unp/Usp4, which binds to the retinoblastoma family of tumor suppressor proteins, was originally described as a nuclear protein. However, more recent studies have shown it to be cytoplasmic. In addition, analysis of its subcellular localization has been complicated by the existence of the paralog Usp15. In this study, we resolved this controversy by investigating the localization of exogenously expressed Usp4 (using red fluorescent protein-Usp4) and of endogenous Usp4 (using highly specific antibodies that can distinguish Usp4 from Usp15). We found that by inhibiting nuclear export with leptomycin B, both exogenous and endogenous Usp4 accumulate in the nucleus. Further, using a Rev-green fluorescent protein-based export assay, we confirmed the existence of a nuclear export signal ((133)VEVYLLELKL(142)) in Usp4. In addition, a functional nuclear import signal ((766)QPQKKKK(772)) was also identified, which was specifically recognized by importin alpha/beta. Finally, we show that the equilibrium of Usp4 subcellular localization varies between different cell types. Usp4 is thus the first DUB reported to have nucleocytoplasmic shuttling properties. The implications of this shuttling for its function as a DUB are discussed.
Insights
The deubiquitylating enzyme Usp4 (Unp) shuttles between the nucleus and cytoplasm. This study identified its nuclear import and export signals, clarifying its dynamic subcellular localization.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The deubiquitylating enzyme (DUB) Usp4 (Unp) is implicated in oncogenesis and interacts with tumor suppressors.
- Previous studies reported conflicting subcellular localization for Usp4 (nuclear vs. cytoplasmic).
- Distinguishing Usp4 from its paralog Usp15 has complicated localization studies.
Purpose of the Study:
- To resolve the controversy surrounding Usp4's subcellular localization.
- To identify the signals governing Usp4's nucleocytoplasmic transport.
- To investigate cell-type-specific variations in Usp4 localization.
Main Methods:
- Localization studies of exogenously expressed Usp4 (red fluorescent protein-Usp4).
- Immunofluorescence using specific antibodies against endogenous Usp4.
- Inhibition of nuclear export (leptomycin B) and nuclear import assays (Rev-GFP).
Main Results:
- Both exogenous and endogenous Usp4 accumulate in the nucleus upon inhibition of nuclear export.
- A nuclear export signal (NES) and a nuclear import signal (NLS) were identified in Usp4.
- The NLS is recognized by importin alpha/beta, and Usp4 localization varies by cell type.
Conclusions:
- Usp4 exhibits nucleocytoplasmic shuttling, a property previously unreported for DUBs.
- Identified signals and cell-type specificity provide a framework for understanding Usp4's dynamic function.
- This shuttling likely impacts Usp4's role in regulating tumor suppressor pathways.
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