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Updated: Aug 21, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Relationship between CDX2 gene methylation and dietary factors in gastric cancer patients
Yasuhito Yuasa1, Hiromi Nagasaki, Yoshimitsu Akiyama
1Department of Molecular Oncology, Tokyo Medical and Dental University, Tokyo, Japan. yuasa.monc@tmd.ac.jp
Abstract:
Epigenetic gene silencing through DNA methylation is one of the important steps in the mechanism underlying tumorigenesis, including in the stomach. Past lifestyle factors of cancer patients, such as intake of vegetables, are very important in affecting gastric carcinogenesis. However, the relationship between DNA methylation and past dietary habits in cancer patients remains largely unknown. The CDX2 homeobox transcription factor plays a key role in intestinal development, but CDX2 is also expressed in most of the intestinal metaplasia and part of the carcinomas of the stomach. We analyzed the methylation status of the CDX2 5' CpG island in gastric cancer cell lines by methylation-specific PCR (MSP), and then CDX2 mRNA was found to be activated after 5-aza-2'-deoxycytidine treatment of the methylation-positive cells. We further examined the methylation status of CDX2 in primary gastric carcinomas by MSP and compared it with the past lifestyle of the patients, including dietary habits. Methylation of CDX2 was found in 20 (34.5%) of the 58 male patients and one (6.7%) of the 15 female patients. Since the methylation frequency was low in the female patients, the analysis was performed only on the male cases. CDX2 methylation was correlated with the decreased intake of green tea and cruciferous vegetables, and also with full or overeating habits. These findings are consistent with epidemiological observations on gastric cancer. We also analyzed the methylation status of p16/INK4a and hMLH1, but their frequencies were not associated with dietary factors or other lifestyle factors. Thus, diet could be an important factor determining the methylation status of genes such as CDX2 and the resultant aberrant expression of genes involved in carcinogenesis.
Insights
Dietary habits, including low intake of green tea and cruciferous vegetables, are linked to CDX2 gene DNA methylation in male gastric cancer patients. This epigenetic change may contribute to stomach cancer development.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- DNA methylation is a key epigenetic mechanism in tumorigenesis, particularly in gastric cancer.
- Lifestyle factors, such as diet, are implicated in gastric carcinogenesis, but their link to DNA methylation is unclear.
- CDX2, a transcription factor crucial for intestinal development, is aberrantly expressed in gastric conditions.
Purpose of the Study:
- To investigate the relationship between DNA methylation of the CDX2 gene and dietary habits in gastric cancer patients.
- To explore the potential role of CDX2 methylation in gastric carcinogenesis.
- To examine other genes like p16/INK4a and hMLH1 for similar associations.
Main Methods:
- Methylation-specific PCR (MSP) was used to analyze CDX2 5' CpG island methylation in gastric cancer cell lines and primary tumors.
- CDX2 mRNA expression was assessed after treatment with 5-aza-2'-deoxycytidine.
- Patient lifestyle and dietary data were collected and compared with methylation status.
Main Results:
- CDX2 methylation was detected in 34.5% of male and 6.7% of female gastric cancer patients.
- In male patients, CDX2 methylation correlated with reduced intake of green tea and cruciferous vegetables, and with overeating habits.
- Methylation frequencies of p16/INK4a and hMLH1 showed no association with lifestyle or dietary factors.
Conclusions:
- Dietary habits may influence the DNA methylation status of genes like CDX2 in gastric cancer.
- Aberrant CDX2 expression due to diet-induced methylation could play a role in stomach cancer development.
- This study highlights the interplay between diet, epigenetics, and gastric carcinogenesis.
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