Programmed -1 ribosomal frameshifting in the SARS coronavirus

F Dos Ramos1, M Carrasco, T Doyle

  • 1Department of Medicine, Addenbrooke's Hospital, University of Cambridge, Box 157, Cambridge CB2 2QQ, UK. fjd24@cam.ac.uk

Insights

Programmed -1 ribosomal frameshifting is a key translation mechanism for coronaviruses. This review details mRNA motifs critical for frameshifting in the novel coronavirus causing severe acute respiratory syndrome.

Area of Science:

  • Molecular Biology
  • Virology
  • Genetics

Background:

  • Programmed -1 ribosomal frameshifting is an alternative translation mechanism used by coronaviruses.
  • This process synthesizes essential viral replication proteins from overlapping open reading frames.
  • The precise contribution of mRNA cis-acting stimulatory structures to frameshifting remains incompletely understood for many coronaviruses.

Purpose of the Study:

  • To review and describe the mRNA motifs involved in programmed -1 ribosomal frameshifting.
  • To focus on the novel coronavirus identified as the causative agent of severe acute respiratory syndrome (SARS).

Main Methods:

  • Literature review of existing studies on coronavirus translation and frameshifting.
  • Analysis of characterized mRNA motifs and their proposed roles in frameshifting.
  • Focus on structural and sequence elements within the viral mRNA.

Main Results:

  • Identification and description of specific mRNA motifs implicated in programmed -1 ribosomal frameshifting.
  • Highlighting the importance of these motifs for efficient viral protein synthesis.
  • Contextualizing these findings within the SARS-causing coronavirus.

Conclusions:

  • Specific mRNA motifs play a crucial role in regulating programmed -1 ribosomal frameshifting in coronaviruses.
  • Understanding these motifs is vital for comprehending viral replication strategies.
  • Further research into these elements could inform therapeutic strategies against SARS-CoV.

Related Concept Videos

Leaky Scanning02:28

Leaky Scanning

During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R stands for...
Coronavirus01:29

Coronavirus

Coronaviruses, including the severe acute respiratory syndrome coronavirus (SARS-CoV), are enveloped viruses characterized by their single-stranded, positive-sense RNA genome and helical nucleocapsid structure. The hallmark of these viruses is their club-shaped spike (S) glycoproteins that protrude from the viral envelope, facilitating attachment to host cells. Typically, coronaviruses infect the upper respiratory tract, often causing mild or asymptomatic disease. However, certain strains like...
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome Profiling02:24

Ribosome Profiling

Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Initiation of Translation02:33

Initiation of Translation

Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...