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In Vitro SUMOylation Assay to Study SUMO E3 Ligase Activity
Published on: January 29, 2018
Sumoylation of MITF and its related family members TFE3 and TFEB
Arlo J Miller1, Carmit Levy, Ian J Davis
1Dana-Farber Cancer Institute and Children's Hospital, Department of Pediatric Hematology/Oncology, Melanoma Program in Medical Oncology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Abstract:
MITF and its related family members TFE3 and TFEB heterodimerize with each other, recognize the same DNA sequences, and are subject to many of the same post-translational modifications. We show that lysine residues within conserved small ubiquitin-like modifier (SUMO) consensus sites in these family members are subject to SUMO modification. Mutation of these sites significantly affects the transcriptional activity of MITF but does not alter dimerization, DNA binding, stability, or nuclear localization. Mutagenesis reducing the number of MITF binding sites in the promoter of TRPM1 from three to one eliminated the difference in transcriptional activity between the MITF mutants. Among other MITF target gene promoter constructs, differences in transcriptional activity between wild type and non-sumoylatable MITF were only seen in promoters with multiple MITF binding sites. These data support a synergy control model in which the functional consequences of MITF sumoylation depend on promoter context. Sumoylation, thus, provides a possible mechanism for altering the effects of MITF by affecting the target genes that it activates.
Insights
Small ubiquitin-like modifier (SUMO) modification of MITF impacts its transcriptional activity. This effect is context-dependent, influenced by the number of MITF binding sites in target gene promoters.
Area of Science:
- Molecular Biology
- Gene Regulation
- Post-Translational Modifications
Background:
- Microphthalmia-associated transcription factor (MITF) belongs to a family of transcription factors including TFE3 and TFEB.
- These factors share dimerization, DNA binding, and post-translational modification characteristics.
- Small ubiquitin-like modifier (SUMO) conjugation is a key post-translational modification affecting protein function.
Purpose of the Study:
- To investigate the role of SUMO modification at conserved consensus sites in MITF, TFE3, and TFEB.
- To determine the functional impact of SUMO modification on MITF's transcriptional activity and other molecular properties.
- To elucidate the promoter context-dependency of MITF SUMOylation's effects on target gene regulation.
Main Methods:
- Site-directed mutagenesis to alter SUMO consensus sites in MITF.
- Analysis of MITF dimerization, DNA binding, stability, and nuclear localization.
- Assessment of MITF's transcriptional activity on target gene promoters (e.g., TRPM1) with varying numbers of binding sites.
Main Results:
- SUMO modification occurs at conserved lysine residues within SUMO consensus sites in MITF family members.
- Mutating these SUMOylation sites significantly altered MITF's transcriptional activity but not dimerization, DNA binding, stability, or nuclear localization.
- The impact of MITF SUMOylation on transcriptional activity was dependent on the number of MITF binding sites within the promoter, particularly evident in promoters with multiple sites.
Conclusions:
- SUMOylation of MITF plays a crucial role in regulating its transcriptional function.
- The functional consequences of MITF SUMOylation are modulated by the specific promoter context, supporting a synergy control model.
- SUMOylation provides a mechanism to fine-tune MITF's activity by influencing the selection of target genes it activates.
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