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Assaying Protein Kinase Activity with Radiolabeled ATP
Published on: May 26, 2017
Kinetic analysis of RSK2 and Elk-1 interaction on the serum response element and implications for cellular
1Yeditepe University, Faculty of Engineering and Architecture, Department of Genetics and Bioengineering, 26 Agustos Yerlesimi, 81120, Kayisdagi, Istanbul, Turkey. iakurnaz@yeditepe.edu.tr
Abstract:
Immediate early gene activation upon mitogenic activation occurs through the serum response element (SRE), which makes the delineation of the upstream pathways a powerful means to engineer cellular responses. The malfunctioning of this system leads to a variety of disorders, ranging from neurological disorders such as Coffin-Lowry syndrome (RSK2 mutations) to cancer (c-fos mutations). We therefore investigated the SRE activation mechanism in a typical mammalian cell. Mitogenic signaling uses the mitogen-activated protein kinase (MAPK) module through increased binding of the ternary complex factor (TCF), such as Elk-1, to the promoter DNA (the SRE element) and subsequent transcriptional activation, as well as through activation of a histone kinase, such as the MAPK-activated protein kinase (MAPKAP-K) ribosomal S6 kinase (RSK2). This computational model uses the biochemical simulation environment GEPASI 3.30 to investigate three major models of interaction for Elk-1 and RSK2, and to study the effect of histone acetyl transferase (HAT) recruitment in each of these models on the local chromatin modifications in the presence and absence of MAPK activation. We show that the quickest response on the chromatin can be achieved in the presence of a preformed complex of RSK2, Elk-1 and HAT, with HAT being activated upon dissociation from the complex upon activation of the MAPK cascade. This study presents critical components in the pathway that can be targeted for engineering of specific inhibitors or activators of the system.
Insights
Understanding immediate early gene activation via the serum response element (SRE) is key for cellular engineering. A preformed complex of RSK2, Elk-1, and HAT offers the fastest chromatin response, aiding in targeted therapeutic development.
Area of Science:
- Cellular biology
- Molecular signaling
- Epigenetics
Background:
- Immediate early gene activation is crucial for cellular responses to mitogens, mediated by the serum response element (SRE).
- Dysregulation of SRE pathways is implicated in diseases like cancer and neurological disorders (e.g., Coffin-Lowry syndrome).
- The mitogen-activated protein kinase (MAPK) pathway plays a central role in SRE activation through transcription factors like Elk-1 and kinases such as RSK2.
Purpose of the Study:
- To investigate the mechanism of SRE activation in mammalian cells.
- To model the interactions between Elk-1, RSK2, and histone acetyl transferase (HAT) recruitment.
- To analyze the impact of these interactions on chromatin modification during MAPK activation.
Main Methods:
- Utilized the GEPASI 3.30 biochemical simulation environment.
- Investigated three distinct interaction models for Elk-1 and RSK2.
- Studied the effect of HAT recruitment on local chromatin modifications under varying MAPK activation conditions.
Main Results:
- Identified a preformed complex of RSK2, Elk-1, and HAT as the fastest pathway for chromatin response.
- HAT activation upon dissociation from this complex, triggered by MAPK cascade activation, is critical.
- Demonstrated differential effects of HAT recruitment based on interaction models and MAPK presence.
Conclusions:
- The study elucidates critical components within the SRE activation pathway.
- A preformed RSK2-Elk-1-HAT complex facilitates rapid chromatin modification.
- Findings provide targets for engineering specific inhibitors or activators of this signaling system.
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