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Updated: Aug 21, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
Allele-dependent similarity between viral and self-peptide presentation by HLA-B27 subtypes
Maria Teresa Fiorillo1, Christine Rückert, Martin Hülsmeyer
1Dipartimento di Biologia Cellulare e dello Sviluppo, Università di Roma La Sapienza, via dei Sardi 70, 00185 Roma, Italy.
Abstract:
Molecular mimicry is discussed as a possible mechanism that may contribute to the development of autoimmune diseases. It could also be involved in the differential association of the human major histocompatibility subtypes HLA-B(*)2705 and HLA-B(*)2709 with ankylosing spondylitis. These two subtypes differ only in residue 116 of the heavy chain (Asp in B(*)2705 and His in B(*)2709), but the reason for the differential disease association is not understood. Using x-ray crystallography, we show here that the viral peptide pLMP2 (RRRWRRLTV, derived from latent membrane protein 2 (residues 236-244) of Epstein-Barr virus) is presented by the B(*)2705 and B(*)2709 molecules in two drastically deviating conformations. Extensive structural similarity between pLMP2 and the self-peptide pVIPR (RRKWRRWHL, derived from vasoactive intestinal peptide type 1 receptor (residues 400-408)) is observed only when the peptides are presented by B(*)2705 because of a salt bridge between Arg(5) of both peptides and the subtype-specific heavy chain residue Asp(116). Combined with functional studies using pLMP2/pVIPR-cross-reactive cytotoxic T cell lines and clones, together with target cells presenting these peptides or a modified peptide analogue, our results reveal that a pathogen-derived peptide can exhibit major histocompatibility complex class I subtype-dependent, drastically distinct binding modes. Furthermore, the results demonstrate that molecular mimicry between pLMP2 and pVIPR in the HLA-B27 context is an allele-dependent property.
Insights
Molecular mimicry, where a pathogen peptide mimics self-peptides, can drive autoimmune diseases like ankylosing spondylitis. This study reveals HLA-B27 subtype-specific binding of viral and self-peptides, explaining disease association differences.
Area of Science:
- Immunology
- Structural Biology
- Genetics
Background:
- Molecular mimicry is a proposed mechanism for autoimmune diseases.
- Human leukocyte antigen (HLA) subtypes HLA-B(*)2705 and HLA-B(*)2709 are differentially associated with ankylosing spondylitis.
- These HLA subtypes differ at residue 116, but the basis for differential disease association is unknown.
Purpose of the Study:
- To investigate the structural basis for the differential association of HLA-B(*)2705 and HLA-B(*)2709 with ankylosing spondylitis.
- To explore the role of molecular mimicry between viral and self-peptides in this context.
Main Methods:
- X-ray crystallography to determine peptide-HLA complex structures.
- Analysis of peptide binding conformations.
- Functional studies using cytotoxic T cell lines and target cells.
Main Results:
- The viral peptide pLMP2 binds to HLA-B(*)2705 and HLA-B(*)2709 in distinct conformations.
- Structural similarity between pLMP2 and the self-peptide pVIPR is observed only with HLA-B(*)2705 due to a specific salt bridge.
- This interaction is dependent on the HLA-B27 subtype and residue 116.
Conclusions:
- Pathogen-derived peptides can bind to MHC class I molecules in drastically different ways depending on the HLA allele.
- Molecular mimicry between viral and self-peptides in the HLA-B27 context is an allele-dependent phenomenon.
- This allele-specific molecular mimicry may explain the differential association of HLA-B27 subtypes with ankylosing spondylitis.
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