Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Liking likelihood.

Airlie J McCoy1

  • 1University of Cambridge, Department of Haematology, Cambridge Institute for Medical Research, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 2XY, England. ajm201@cam.ac.uk

Acta Crystallographica. Section D, Biological Crystallography
|December 2, 2004
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Scotty: lattice coincidences for macromolecular crystallographic phasing.

Acta crystallographica. Section D, Structural biology·2026
Same author

Scotty: lattice coincidences in the Protein Data Bank.

Acta crystallographica. Section D, Structural biology·2026
Same author

AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network.

Nature methods·2026
Same author

Xtricorder: a likelihood-enhanced self-rotation function and application to a machine learning-enhanced Matthews prediction of asymmetric unit copy number.

Acta crystallographica. Section D, Structural biology·2025
Same author

AlphaFold as a Prior: Experimental Structure Determination Conditioned on a Pretrained Neural Network.

bioRxiv : the preprint server for biology·2025
Same author

Likelihood-based interactive local docking into cryo-EM maps in ChimeraX.

Acta crystallographica. Section D, Structural biology·2024
Same journal

Structural insights into the synthesis of FMN in prokaryotic organisms.

Acta crystallographica. Section D, Biological crystallography·2015
Same journal

Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.

Acta crystallographica. Section D, Biological crystallography·2015
Same journal

Serial crystallographic analysis of protein isomorphous replacement data from a mixture of native and derivative microcrystals.

Acta crystallographica. Section D, Biological crystallography·2015
Same journal

The first crystal structure of the peptidase domain of the U32 peptidase family.

Acta crystallographica. Section D, Biological crystallography·2015
Same journal

Atomic resolution crystal structure of Sapp2p, a secreted aspartic protease from Candida parapsilosis.

Acta crystallographica. Section D, Biological crystallography·2015
Same journal

Structural characterization of a mitochondrial 3-ketoacyl-CoA (T1)-like thiolase from Mycobacterium smegmatis.

Acta crystallographica. Section D, Biological crystallography·2015
See all related articles

This study introduces a novel dice-based approach to teach maximum-likelihood methods in macromolecular crystallography. This accessible method simplifies complex concepts for students, improving understanding of modern structure determination software.

Area of Science:

  • Structural Biology
  • Crystallography
  • Biophysics

Background:

  • Maximum-likelihood methods are crucial in modern macromolecular crystallography for data reduction, phasing, and refinement.
  • Current educational approaches often fail to adequately teach these methods due to perceived complexity.
  • Students lack understanding of the underlying principles of widely used structure determination software.

Purpose of the Study:

  • To develop an accessible pedagogical method for teaching maximum-likelihood concepts in macromolecular crystallography.
  • To bridge the gap between traditional teaching methods and modern computational tools.
  • To simplify the understanding of complex statistical methods for students.

Main Methods:

  • Introduction of maximum-likelihood concepts using a simplified dice-based analogy.

Related Experiment Videos

  • Demonstration of how these dice concepts apply to core crystallographic techniques.
  • Integration of these concepts into teaching refinement, molecular replacement, and experimental phasing.
  • Main Results:

    • The dice-based method effectively illustrates fundamental maximum-likelihood principles.
    • Maximum-likelihood techniques in crystallography were unified under a common conceptual framework.
    • The proposed teaching approach is less time-consuming and conceptually simpler than traditional methods.

    Conclusions:

    • A novel, accessible method for teaching maximum-likelihood methods in macromolecular crystallography has been developed.
    • This approach demystifies complex statistical techniques, making them understandable for students.
    • The unified conceptual framework enhances the efficiency and effectiveness of crystallography education.