Toxicogenomics and systems toxicology: aims and prospects
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Updated: Aug 20, 2026

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation
Published on: June 17, 2015
Michael D Waters1, Jennifer M Fostel
1National Center for Toxicogenomics, National Institute of Environmental Health Sciences, PO Box 12233, MD F1-05, 111 Alexander Drive, Research Triangle Park, North Carolina 27709-2233, USA. waters2@niehs.nih.gov
Abstract:
Toxicogenomics combines transcript, protein and metabolite profiling with conventional toxicology to investigate the interaction between genes and environmental stress in disease causation. The patterns of altered molecular expression that are caused by specific exposures or disease outcomes have revealed how several toxicants act and cause disease. Despite these success stories, the field faces noteworthy challenges in discriminating the molecular basis of toxicity. We argue that toxicology is gradually evolving into a systems toxicology that will eventually allow us to describe all the toxicological interactions that occur within a living system under stress and use our knowledge of toxicogenomic responses in one species to predict the modes-of-action of similar agents in other species.
Insights
Toxicogenomics uses molecular profiling to understand how toxicants cause disease by studying gene-environment interactions. This evolving field of systems toxicology aims to predict toxic effects across species.
Area of Science:
- Toxicology
- Molecular Biology
- Environmental Health
Background:
- Toxicogenomics integrates molecular profiling (transcript, protein, metabolite) with conventional toxicology.
- It investigates gene-environment interactions in disease causation.
- Understanding molecular expression patterns reveals toxicant mechanisms.
Purpose of the Study:
- To highlight the evolution of toxicology towards a systems toxicology approach.
- To address challenges in discriminating the molecular basis of toxicity.
- To enable prediction of toxicant modes-of-action across species.
Main Methods:
- Transcript, protein, and metabolite profiling.
- Conventional toxicology methods.
- Analysis of molecular expression patterns.
Main Results:
- Identified how specific exposures alter molecular expression to cause disease.
- Revealed mechanisms of action for several toxicants.
- Highlighted challenges in discerning the molecular basis of toxicity.
Conclusions:
- Toxicology is advancing to systems toxicology, enabling comprehensive understanding of toxicological interactions.
- Systems toxicology facilitates prediction of toxicant effects in different species based on known responses.
- This approach enhances our ability to manage environmental stress and disease causation.
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