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Updated: Aug 20, 2026

RNA Secondary Structure Prediction Using High-throughput SHAPE
Published on: May 31, 2013
On a six-dimensional representation of RNA secondary structures
Bo Liao1, Kequan Ding, Tian-ming Wang
1Science 100, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China. dragonbw@163.com
Abstract:
In this paper, we proposed a 6-D representation of RNA secondary structures. The use of the 6-D representation is illustrated by constructing structure invariants. Comparisons with the similarity/dissimilarity results based on 6-D representation for a set of RNA secondary structures, are considered to illustrate the use of our structure invariants based on the entries in derived sequence matrices restricted to a selected width of a band along the main diagonal.
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