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Updated: Aug 20, 2026

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
Published on: April 29, 2010
Viral transport of DNA damage that mimics a stalled replication fork
Jaana Jurvansuu1, Kenneth Raj, Andrzej Stasiak
1Swiss Institute for Experimental Cancer Research and National Center of Competence in Research Molecular Oncology, Epalinges, Lausanne, Switzerland.
Abstract:
Adeno-associated virus type 2 (AAV2) infection incites cells to arrest with 4N DNA content or die if the p53 pathway is defective. This arrest depends on AAV2 DNA, which is single stranded with inverted terminal repeats that serve as primers during viral DNA replication. Here, we show that AAV2 DNA triggers damage signaling that resembles the response to an aberrant cellular DNA replication fork. UV treatment of AAV2 enhances the G2 arrest by generating intrastrand DNA cross-links which persist in infected cells, disrupting viral DNA replication and maintaining the viral DNA in the single-stranded form. In cells, such DNA accumulates into nuclear foci with a signaling apparatus that involves DNA polymerase delta, ATR, TopBP1, RPA, and the Rad9/Rad1/Hus1 complex but not ATM or NBS1. Focus formation and damage signaling strictly depend on ATR and Chk1 functions. Activation of the Chk1 effector kinase leads to the virus-induced G2 arrest. AAV2 provides a novel way to study the cellular response to abnormal DNA replication without damaging cellular DNA. By using the AAV2 system, we show that in human cells activation of phosphorylation of Chk1 depends on TopBP1 and that it is a prerequisite for the appearance of DNA damage foci.
Insights
Adeno-associated virus type 2 (AAV2) infection triggers cellular DNA damage responses. This study reveals AAV2 DNA activates ATR-Chk1 signaling, causing cell cycle arrest and offering insights into DNA replication stress.
Area of Science:
- Molecular Biology
- Virology
- Cell Biology
Background:
- Adeno-associated virus type 2 (AAV2) infection can cause cell cycle arrest or death, particularly if the p53 pathway is compromised.
- AAV2 DNA, characterized by single strands and inverted terminal repeats, plays a crucial role in viral DNA replication and cell cycle regulation.
Purpose of the Study:
- To investigate the DNA damage signaling pathways induced by AAV2 infection.
- To elucidate the role of specific cellular proteins, such as ATR and Chk1, in the AAV2-mediated cellular response.
- To explore the potential of AAV2 as a tool for studying cellular responses to aberrant DNA replication.
Main Methods:
- Infection of human cells with AAV2, with and without UV treatment.
- Analysis of DNA damage signaling pathways using techniques to detect protein interactions and localization (e.g., foci formation).
- Assessment of cell cycle arrest (G2) and the roles of key signaling proteins like ATR, Chk1, TopBP1, and DNA polymerase delta.
Main Results:
- AAV2 DNA triggers a DNA damage response similar to that of aberrant cellular DNA replication forks.
- UV treatment of AAV2 enhances G2 arrest by creating persistent intrastrand DNA cross-links, maintaining viral DNA in a single-stranded form.
- Nuclear foci formation and damage signaling involve DNA polymerase delta, ATR, TopBP1, RPA, and the Rad9/Rad1/Hus1 complex, but not ATM or NBS1.
- ATR and Chk1 functions are essential for focus formation and damage signaling, leading to G2 arrest.
- In human cells, AAV2 infection demonstrates that TopBP1 is required for Chk1 phosphorylation and subsequent DNA damage foci formation.
Conclusions:
- AAV2 infection serves as a model system to study cellular responses to abnormal DNA replication without causing direct cellular DNA damage.
- The ATR-Chk1 pathway, dependent on TopBP1, is critical for mediating the G2 arrest induced by AAV2.
- This research provides novel insights into the interplay between viral DNA replication and host cell DNA damage response machinery.
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