Impact of mutS inactivation on foreign DNA acquisition by natural transformation in Pseudomonas stutzeri
Petra Meier1, Wilfried Wackernagel
1Genetics, Department of Biology and Environmental Sciences, Carl von Ossietzky University of Oldenburg, Germany.
Abstract:
In prokaryotic mismatch repair the MutS protein and its homologs recognize the mismatches. The mutS gene of naturally transformable Pseudomonas stutzeri ATCC 17587 (genomovar 2) was identified and characterized. The deduced amino acid sequence (859 amino acids; 95.6 kDa) displayed protein domains I to IV and a mismatch-binding motif similar to those in MutS of Escherichia coli. A mutS::aac mutant showed 20- to 163-fold-greater spontaneous mutability. Transformation experiments with DNA fragments of rpoB containing single nucleotide changes (providing rifampin resistance) indicated that mismatches resulting from both transitions and transversions were eliminated with about 90% efficiency in mutS+. The mutS+ gene of strain ATCC 17587 did not complement an E. coli mutant but partially complemented a P. stutzeri JM300 mutant (genomovar 4). The declining heterogamic transformation by DNA with 0.1 to 14.6% sequence divergence was partially alleviated by mutS::aac, indicating that there was a 14 to 16% contribution of mismatch repair to sexual isolation. Expression of mutS+ from a multicopy plasmid eliminated autogamic transformation and greatly decreased heterogamic transformation, suggesting that there is strong limitation of MutS in the wild type for marker rejection. Remarkably, mutS::aac altered foreign DNA acquisition by homology-facilitated illegitimate recombination (HFIR) during transformation, as follows: (i) the mean length of acquired DNA was increased in transformants having a net gain of DNA, (ii) the HFIR events became clustered (hot spots) and less dependent on microhomologies, which may have been due to topoisomerase action, and (iii) a novel type of transformants (14%) had integrated foreign DNA with no loss of resident DNA. We concluded that in P. stutzeri upregulation of MutS could enforce sexual isolation and downregulation could increase foreign DNA acquisition and that MutS affects mechanisms of HFIR.
Insights
Pseudomonas stutzeri MutS protein regulates DNA repair and genetic exchange. Downregulating MutS enhances foreign DNA acquisition, while upregulation enforces sexual isolation and affects recombination mechanisms.
Area of Science:
- Microbiology
- Molecular Biology
- Genetics
Background:
- Prokaryotic mismatch repair involves MutS proteins recognizing DNA mismatches.
- The mutS gene in Pseudomonas stutzeri ATCC 17587 was identified and characterized.
Purpose of the Study:
- To investigate the role of the mutS gene in DNA repair, genetic exchange, and foreign DNA acquisition in P. stutzeri.
- To understand the impact of MutS protein levels on sexual isolation and homology-facilitated illegitimate recombination (HFIR).
Main Methods:
- Identification and characterization of the P. stutzeri mutS gene.
- Construction and analysis of a mutS::aac mutant.
- Transformation experiments using DNA fragments with nucleotide changes.
- Complementation studies with E. coli and P. stutzeri mutants.
- Analysis of foreign DNA acquisition and HFIR mechanisms.
Main Results:
- A mutS::aac mutant exhibited significantly increased spontaneous mutability.
- Mismatch repair efficiency was approximately 90% for transitions and transversions in wild-type P. stutzeri.
- MutS deficiency partially alleviated sexual isolation, indicating a 14-16% contribution of mismatch repair.
- Overexpression of mutS+ eliminated autogamic transformation and reduced heterogamic transformation.
- MutS deficiency altered foreign DNA acquisition, increasing acquired DNA length and clustering HFIR events.
Conclusions:
- MutS protein levels in P. stutzeri critically influence sexual isolation and foreign DNA acquisition.
- Upregulation of MutS enforces sexual isolation, while downregulation increases foreign DNA uptake.
- MutS plays a significant role in the mechanisms of homology-facilitated illegitimate recombination (HFIR).
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