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Related Experiment Videos

The PEDANT genome database in 2005.

M Louise Riley1, Thorsten Schmidt, Christian Wagner

  • 1Institute for Bioinformatics, GSF-National Research Center for Health and Environment, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.

Nucleic Acids Research
|December 21, 2004
PubMed
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The PEDANT genome database offers automated bioinformatics analysis and annotation for publicly available genomes. It provides comprehensive data for over 1.2 million proteins across diverse species, aiding genomic research.

Area of Science:

  • Bioinformatics
  • Genomics
  • Computational Biology

Background:

  • Publicly available genomes require extensive bioinformatics analysis.
  • Manual curation is not feasible for the vast number of unannotated protein sequences.
  • Automated annotation is crucial for understanding genomic content.

Purpose of the Study:

  • To present the PEDANT genome database as a resource for automated bioinformatics analysis.
  • To provide robust, genome-oriented annotation for publicly available protein sequences.
  • To facilitate exploration of genomic context and functional content.

Main Methods:

  • Pre-computed bioinformatics analyses of public genomes.
  • Genome-oriented annotation of amino acid sequences.

Related Experiment Videos

  • Category-based query mechanism for functional and structural evaluation.

    • Main Results:

    • The PEDANT database contains comprehensive annotation for over 1,240,000 proteins.
    • Data spans 270 eubacterial, 23 archeal, and 41 eukaryotic genomes.
    • Annotation is genome-oriented, enabling contextual analysis.

    Conclusions:

    • PEDANT provides a valuable resource for automated genome annotation.
    • The database supports exploration of genomic context and functional content.
    • It significantly expands the accessibility of annotated protein sequence data.