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Published on: June 30, 2022
Physical and genetic interactions link the yeast protein Zds1p with mRNA nuclear export
Francisco Estruch1, Christine A Hodge, Susana Rodríguez-Navarro
1Departamento de Bioquímica y Biología Molecular, Facultad de Biología, Universitat de Valencia, Dr. Moliner, 50. Burjassot 46100, Spain. francisco.estruch@uv.es
Abstract:
Eukaryotic gene expression requires the export of mRNA from the nucleus to the cytoplasm. The DEAD box protein Dbp5p is an essential export factor conserved from yeast to man. A fraction of Dbp5p forms a complex with nucleoporins of the cytoplasmic filaments of the nuclear pore complex. Gfd1p was identified originally as a multicopy suppressor of the rat8-2 ts allele of DBP5. Here we reported that Dbp5p and Gfd1p interact with Zds1p, a protein previously identified as a multicopy suppressor in several yeast genetic screens. By using the two-hybrid system, we showed that Zds1p interacts in vivo with both Gfd1p and Dbp5p. In vitro binding experiments revealed that Gfd1p and Dbp5p bind directly to the C-terminal part of Zds1p. In addition, ZDS1 interacted genetically with mutant alleles of genes encoding key factors in mRNA export, including DBP5 and MEX67. Furthermore, deletion of ZDS1 or of both ZDS1 and the closely related ZDS2 exacerbated the poly(A)+ export defects shown by dbp5-2 and mex67-5 mutants. We proposed that Zds1p associates with the complex formed by Dbp5p, Gfd1p, and nucleoporins at the cytosolic fibrils of the nuclear pore complex and is required for optimal mRNA export.
Insights
Zds1p, a protein interacting with Dbp5p and Gfd1p, is crucial for mRNA export. Deleting ZDS1 worsens export defects, suggesting Zds1p
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Eukaryotic gene expression relies on mRNA export from the nucleus.
- Dbp5p, a DEAD box protein, is a vital, conserved mRNA export factor.
- Dbp5p associates with nuclear pore complex (NPC) cytoplasmic filaments.
Purpose of the Study:
- To investigate the role of Zds1p in mRNA export.
- To determine the interaction of Zds1p with Dbp5p and Gfd1p.
- To elucidate Zds1p's function in the mRNA export pathway.
Main Methods:
- Yeast two-hybrid system for in vivo interaction studies.
- In vitro binding assays to confirm direct protein interactions.
- Genetic interaction analysis using mutant alleles.
- Phenotypic analysis of gene deletion mutants in poly(A)+ export.
Main Results:
- Zds1p interacts both in vivo and in vitro with Dbp5p and Gfd1p.
- Gfd1p and Dbp5p directly bind to the C-terminal region of Zds1p.
- ZDS1 shows genetic interactions with key mRNA export factors (DBP5, MEX67).
- Deletion of ZDS1 or ZDS2 exacerbates mRNA export defects in dbp5 and mex67 mutants.
Conclusions:
- Zds1p likely associates with the Dbp5p-Gfd1p-nucleoporin complex at NPC cytosolic fibrils.
- Zds1p is essential for optimal mRNA export in yeast.
- This study identifies Zds1p as a novel component of the mRNA export machinery.
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