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Updated: Aug 20, 2026

Oligopeptide Competition Assay for Phosphorylation Site Determination
Published on: May 18, 2017
Phosphoryl transfer step in the C-terminal Src kinase controls Src recognition
Scot A Lieser1, Caitlin Shindler, Brandon E Aubol
1Department of Pharmacology, University of California at San Diego, La Jolla, California 92093-0728, USA.
Abstract:
All members of the Src family of nonreceptor protein tyrosine kinases are phosphorylated and subsequently down-regulated by the C-terminal Src kinase, Csk. Although the recognition of Src protein substrates is essential for a diverse set of signaling events linked to cellular growth and differentiation, the factors controlling this critical protein-protein interaction are not well known. To understand how Csk recognizes Src, the chemical/physical events that modulate apparent substrate affinity and turnover were investigated. Src is phosphorylated in a biphasic manner in rapid quench flow experiments, suggesting that the phosphoryl transfer step is fast and highly favorable and does not limit overall turnover. As opposed to other kinase-substrate pairs, turnover is not limited by the physical release of ADP based on stopped-flow fluorescence and catalytic trapping experiments, suggesting that other steps control net phosphorylation. The K(d) for Src is considerably larger than the K(m) based on single turnover kinetic and equilibrium sedimentation experiments. Taken together, the data are consistent with a mechanism whereby Csk achieves a low K(m) for the substrate Src, not by stabilizing protein-protein interactions but rather by facilitating a fast phosphoryl transfer step. In this manner, the phosphoryl transfer step functions as a chemical clamp facilitating substrate recognition.
Insights
The C-terminal Src kinase (Csk) down-regulates Src family kinases. Csk recognizes Src not by strong binding, but by a rapid phosphorylation step, acting as a chemical clamp for substrate recognition.
Area of Science:
- Biochemistry
- Molecular Biology
- Cell Signaling
Background:
- Src family kinases are crucial for cellular growth and differentiation.
- C-terminal Src kinase (Csk) phosphorylates and down-regulates Src family kinases.
- The precise mechanisms of Csk-Src substrate recognition remain largely unknown.
Purpose of the Study:
- To investigate the chemical and physical factors governing Csk's recognition of its substrate, Src.
- To elucidate the kinetic parameters that modulate Src substrate affinity and turnover by Csk.
Main Methods:
- Utilized rapid quench flow experiments to analyze Src phosphorylation kinetics.
- Employed stopped-flow fluorescence and catalytic trapping experiments to assess ADP release.
- Conducted single turnover kinetic and equilibrium sedimentation experiments to determine binding affinities (K(m) and K(d)).
Main Results:
- Src phosphorylation by Csk occurs in a biphasic manner, indicating a rapid and favorable phosphoryl transfer step.
- Turnover is not limited by ADP release, distinguishing it from other kinase-substrate interactions.
- The dissociation constant (K(d)) for Src is significantly larger than the Michaelis constant (K(m)), suggesting weak initial binding.
Conclusions:
- Csk achieves efficient recognition and phosphorylation of Src not through strong protein-protein interactions.
- A rapid phosphoryl transfer step acts as a 'chemical clamp,' facilitating substrate recognition and turnover.
- This mechanism highlights a unique mode of kinase-substrate interaction crucial for regulating Src signaling pathways.
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Phosphorylation
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...
Phosphorylation
During phosphorylation, protein kinases transfer the terminal phosphate group of ATP to specific amino acid side chains of substrate proteins. Serine, threonine, and tyrosine are the most commonly...

