Oncogenic AKAP9-BRAF fusion is a novel mechanism of MAPK pathway activation in thyroid cancer
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Updated: Jun 20, 2026

Characterize Disease-related Mutants of RAF Family Kinases by Using a Set of Practical and Feasible Methods
Published on: July 17, 2019
Raffaele Ciampi1, Jeffrey A Knauf, Roswitha Kerler
1Department of Pathology and Laboratory Medicine and Division of Endocrinology, University of Cincinnati College of Medicine, Cincinnati, Ohio 45267-0529, USA.
Abstract:
Genes crucial for cancer development can be mutated via various mechanisms, which may reflect the nature of the mutagen. In thyroid papillary carcinomas, mutations of genes coding for effectors along the MAPK pathway are central for transformation. BRAF point mutation is most common in sporadic tumors. By contrast, radiation-induced tumors are associated with paracentric inversions activating the receptor tyrosine kinases RET and NTRK1. We report here a rearrangement of BRAF via paracentric inversion of chromosome 7q resulting in an in-frame fusion between exons 1-8 of the AKAP9 gene and exons 9-18 of BRAF. The fusion protein contains the protein kinase domain and lacks the autoinhibitory N-terminal portion of BRAF. It has elevated kinase activity and transforms NIH3T3 cells, which provides evidence, for the first time to our knowledge, of in vivo activation of an intracellular effector along the MAPK pathway by recombination. The AKAP9-BRAF fusion was preferentially found in radiation-induced papillary carcinomas developing after a short latency, whereas BRAF point mutations were absent in this group. These data indicate that in thyroid cancer, radiation activates components of the MAPK pathway primarily through chromosomal paracentric inversions, whereas in sporadic forms of the disease, effectors along the same pathway are activated predominantly by point mutations.
Insights
Radiation can cause thyroid papillary carcinomas by rearranging the BRAF gene, forming AKAP9-BRAF fusions. This differs from sporadic tumors, which typically have BRAF point mutations, highlighting distinct cancer development pathways.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Mutations in genes regulating the MAPK pathway are central to thyroid papillary carcinoma development.
- Sporadic tumors often feature BRAF point mutations, while radiation-induced tumors show rearrangements activating receptor tyrosine kinases.
Purpose of the Study:
- To investigate the mechanism of BRAF gene activation in radiation-induced thyroid papillary carcinomas.
- To identify novel gene rearrangements in cancer development.
Main Methods:
- Analysis of chromosomal rearrangements in radiation-induced thyroid papillary carcinomas.
- Identification of gene fusions using molecular techniques.
- Functional assessment of the resulting fusion protein in cell transformation assays.
Main Results:
- A novel in-frame fusion, AKAP9-BRAF, was identified, resulting from a paracentric inversion on chromosome 7q.
- The AKAP9-BRAF fusion protein exhibits elevated kinase activity and transforms NIH3T3 cells.
- This fusion was predominantly found in radiation-induced tumors with short latency, and BRAF point mutations were absent in this group.
Conclusions:
- Chromosomal rearrangements, specifically paracentric inversions leading to gene fusions like AKAP9-BRAF, are a key mechanism for activating MAPK pathway components in radiation-induced thyroid cancer.
- This contrasts with sporadic thyroid cancers, where BRAF point mutations are the predominant activation mechanism.
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